genome.fa.s9266.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009266.1 Hibiscus syriacus cultivar Beakdansim tig00112921_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1543912

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1476775--1476827	9	5.4	10	84	10	74	35	30	20	13	1.91
1479732--1479761	13	2.3	13	100	0	60	16	46	23	13	1.82
1479791--1479858	29	2.3	29	85	5	93	29	5	23	41	1.78
1480561--1480629	24	2.9	24	73	0	66	24	11	18	44	1.83
1484742--1484810	24	2.9	24	73	0	66	24	11	18	44	1.83
1486101--1486141	19	2.2	19	100	0	82	53	19	0	26	1.45
1490073--1490166	49	1.9	50	93	4	165	11	9	40	38	1.74
1490110--1490140	16	2.0	16	93	6	55	6	12	51	29	1.65
1491071--1491123	21	2.5	21	93	0	88	28	30	22	18	1.98
1491138--1491387	21	12.1	21	71	13	180	21	19	23	35	1.96
1491157--1491416	82	3.2	82	91	0	412	21	18	22	37	1.94
1491157--1491416	42	6.3	42	91	3	395	21	18	22	37	1.94
1504920--1505063	18	8.1	18	73	21	83	72	0	20	5	1.09
1504973--1505031	28	2.1	28	81	9	68	74	1	20	3	1.05
1504930--1505063	54	2.6	54	77	14	131	73	0	20	5	1.08
1504930--1505057	27	4.9	25	72	18	84	73	0	20	5	1.08
1505017--1505068	16	3.3	16	86	2	70	76	0	15	7	0.99
1506382--1506904	51	10.1	51	92	2	821	29	14	28	27	1.95
1509544--1509816	42	6.5	42	90	2	397	36	22	18	21	1.95
1509569--1509831	21	12.6	21	70	13	186	36	23	18	21	1.95
1511740--1511799	28	2.1	29	81	6	68	50	11	3	35	1.56
1514052--1514082	7	4.4	7	100	0	62	25	29	29	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1514072--1514129	17	3.4	17	97	0	107	17	24	41	17	1.90
1514123--1514192	19	3.7	19	92	3	106	24	30	27	18	1.98
1514123--1514191	9	7.3	9	76	9	66	24	30	27	17	1.97
1521364--1521400	7	5.4	7	90	6	58	24	27	29	18	1.98
1521368--1521394	13	2.1	13	100	0	54	25	29	29	14	1.95
1523457--1523506	22	2.2	21	80	13	55	54	4	0	42	1.19
1524496--1524563	18	3.8	18	96	3	120	29	0	16	54	1.42
1528876--1528924	20	2.5	20	96	0	89	12	2	30	55	1.48
1529845--1529918	28	2.6	28	84	0	112	41	27	13	17	1.87
1534179--1534247	28	2.5	28	90	0	111	39	27	15	17	1.90
1536528--1536597	3	24.0	3	80	2	63	38	0	0	61	0.96
1540025--1540072	14	3.5	13	83	8	60	18	18	8	54	1.68
1540035--1540074	7	6.0	7	85	8	57	15	17	10	57	1.64
1543356--1543422	32	2.1	32	91	0	107	46	19	16	17	1.85

Tables:   1   2   3   4   5   6   7

The End!