genome.fa.s9266.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009266.1 Hibiscus syriacus cultivar Beakdansim tig00112921_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1543912

Tables:   1   2   3   4   5   6   7   

This is table  1  of  7  ( 756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14--30203	39	790.0	39	77	9	16824	29	17	16	37	1.92
141--271	67	2.0	65	86	3	181	25	13	20	40	1.89
206--30203	117	260.9	117	77	8	21828	29	17	16	37	1.92
3395--3479	37	2.3	38	80	9	95	32	11	16	38	1.85
7593--7629	19	1.9	19	94	0	65	16	13	27	43	1.85
7479--7748	136	2.0	129	81	7	301	26	16	16	40	1.90
8820--9000	38	5.0	33	78	15	134	27	20	16	36	1.93
9494--9560	20	3.5	20	66	20	54	28	17	14	38	1.90
9500--9748	131	1.9	131	82	6	317	28	16	16	38	1.91
12066--12286	38	6.1	34	70	19	110	31	15	14	38	1.87
14200--14367	90	1.9	90	81	7	207	29	14	17	38	1.90
16524--16703	91	2.0	93	85	8	253	29	15	16	38	1.89
16651--17037	69	5.7	67	81	15	225	27	18	16	37	1.92
16950--17197	99	2.4	101	76	17	223	26	18	13	41	1.88
17010--17103	37	2.7	36	84	13	103	28	18	10	42	1.83
20647--20712	22	3.2	22	63	20	61	34	18	16	30	1.93
21768--21830	20	3.2	20	63	4	56	26	19	15	38	1.92
22398--22528	67	2.0	65	86	3	181	24	14	20	40	1.90
26364--26428	22	3.2	22	62	20	59	33	20	16	29	1.95
27061--27097	19	1.9	19	94	0	65	16	13	27	43	1.85
26985--27168	97	1.9	97	84	2	244	28	15	16	40	1.88
26946--27216	136	2.0	135	82	4	330	27	16	15	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26907--27249	175	2.0	175	82	5	426	27	15	15	40	1.88
26883--37989	195	54.9	214	73	13	2096	28	17	16	37	1.92
28012--28192	95	1.9	94	82	6	222	28	15	17	38	1.90
27985--28235	134	1.9	133	82	5	317	28	16	16	38	1.90
27950--28273	173	1.9	173	82	5	413	28	15	16	39	1.89
29217--29347	67	2.0	65	86	3	181	24	14	20	40	1.90
30180--30226	19	2.3	20	82	10	60	14	14	21	48	1.80
30210--31230	39	26.3	39	83	2	1198	28	17	15	37	1.91
30113--30296	97	1.9	97	83	4	237	28	15	17	38	1.90
30074--30344	136	2.0	136	83	2	348	27	16	16	38	1.91
30035--30377	175	2.0	175	85	2	465	27	16	17	39	1.90
31212--31254	19	2.3	19	84	8	61	13	16	25	44	1.85
30224--38731	117	72.7	117	75	8	3452	28	17	16	37	1.92
31237--32253	39	26.3	38	81	6	1032	29	17	15	37	1.91
31140--31323	97	1.9	96	82	6	228	27	14	17	40	1.89
31095--31371	136	2.0	135	82	5	326	26	16	16	40	1.90
31079--31404	175	1.9	175	82	5	417	27	15	16	40	1.88
31237--32253	78	13.2	78	82	2	1144	29	17	15	37	1.91
32230--32276	19	2.3	20	82	10	60	14	14	21	48	1.80
32260--38731	39	166.4	39	77	7	3730	28	17	16	37	1.92
32118--32394	136	2.0	135	81	6	319	26	16	15	41	1.89
32107--32427	175	1.8	175	83	5	425	27	15	15	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32543--32608	33	2.0	33	90	0	105	25	19	13	40	1.89
34933--34997	19	3.4	19	70	4	67	26	15	13	44	1.84
34908--35255	175	2.0	174	81	9	406	28	16	17	37	1.91
35720--35782	20	3.2	20	63	4	56	26	19	15	38	1.92
36083--36211	66	2.0	66	88	0	195	24	17	18	39	1.92
37547--37599	27	2.0	27	92	0	88	20	9	24	45	1.81
37927--37988	20	3.2	20	66	13	56	25	12	17	43	1.85
41722--41761	21	1.9	21	85	10	55	35	10	2	52	1.48
42696--45785	39	79.7	39	86	1	3832	27	18	16	37	1.92
44682--44747	32	2.1	32	97	0	123	22	19	15	42	1.88
57906--57964	30	2.0	29	90	3	91	40	11	23	23	1.88
58797--58839	19	2.3	19	84	8	52	41	16	6	34	1.75
60929--61143	75	2.9	73	88	4	277	29	0	13	57	1.40
61759--61801	18	2.4	18	84	7	52	20	6	0	72	1.08
61844--61901	7	8.1	7	75	21	50	24	3	0	72	1.00
61846--61904	15	4.1	14	75	16	59	22	3	0	74	0.96
61844--61946	35	2.8	36	81	15	106	25	3	0	70	1.04
61873--61937	15	4.1	15	71	21	53	26	1	0	72	0.94
63439--63514	20	3.7	20	81	15	91	25	18	31	25	1.97
63439--63516	21	3.7	21	82	16	90	25	17	30	25	1.97
63476--63666	75	2.6	74	89	5	278	25	17	25	30	1.97
65716--65791	23	3.4	23	82	10	95	31	18	19	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65736--65816	21	3.8	21	79	14	76	27	17	23	32	1.97
65710--65816	44	2.4	43	81	10	119	29	16	23	29	1.96
71623--71747	54	2.3	55	98	1	243	24	21	23	30	1.99
76040--76077	19	2.0	19	89	0	58	31	0	13	55	1.38
76012--76166	76	2.0	77	92	1	258	25	1	12	60	1.39
76921--77000	36	2.3	34	89	4	115	23	3	0	72	1.01
78558--78622	17	3.8	18	74	11	57	3	32	0	64	1.09
83388--83458	33	2.2	33	87	5	101	38	16	23	21	1.93
83396--83461	33	2.0	33	93	0	114	34	16	25	22	1.95
85447--85546	34	3.0	34	89	4	141	39	23	13	25	1.90
90108--90205	33	3.0	33	91	5	146	37	24	13	24	1.91
91324--91390	14	4.6	14	89	10	107	64	0	29	5	1.17
91319--91388	31	2.3	31	100	0	140	64	0	30	5	1.17
93548--93585	16	2.4	16	86	0	58	7	50	23	18	1.73
94340--94370	2	15.5	2	100	0	62	51	0	0	48	1.00
94623--94670	22	2.3	22	76	16	57	25	20	14	39	1.91
95640--95692	22	2.4	22	93	0	88	37	11	13	37	1.80
103410--103467	3	18.7	3	89	10	82	63	0	0	36	0.94
119275--119328	18	3.2	18	72	22	53	66	0	1	31	1.02
119268--119305	20	1.9	20	84	10	51	71	0	0	28	0.87
119478--119549	31	2.2	35	82	9	89	54	1	0	44	1.08
121069--121118	18	2.7	18	84	3	64	58	4	8	30	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121480--121509	8	3.9	8	91	8	53	0	10	0	90	0.47
121480--121512	15	2.3	14	94	5	57	0	9	0	90	0.44
122566--122635	34	2.1	32	84	5	86	22	30	14	32	1.94
122918--122959	21	2.0	21	95	0	75	26	28	21	23	1.99
123108--123165	30	1.9	31	89	6	93	41	17	6	34	1.76
125953--126022	34	2.1	32	84	5	86	22	30	14	32	1.94
126305--126346	21	2.0	21	95	0	75	26	28	21	23	1.99
133111--133142	15	2.1	15	94	0	55	46	9	18	25	1.79
137070--137129	24	2.5	24	83	8	68	61	1	3	33	1.22
138774--138829	3	18.7	3	82	14	71	64	0	1	33	1.04
151239--151268	15	1.9	16	93	6	53	23	6	3	66	1.30
151246--151283	16	2.3	17	81	9	51	18	13	2	65	1.37
151500--151555	24	2.3	24	93	0	94	25	7	16	51	1.69
155959--155993	18	1.9	18	88	0	52	48	0	0	51	1.00
156656--156778	63	2.0	62	87	4	176	47	24	9	18	1.79
161188--161248	4	15.2	4	85	0	68	50	14	0	34	1.43
161196--161234	2	19.5	2	83	0	51	51	7	0	41	1.31
161188--161248	8	7.6	8	88	0	77	50	14	0	34	1.43
161192--161248	20	2.8	20	89	0	87	50	14	0	35	1.42
161583--161678	31	3.1	30	80	3	102	33	21	18	26	1.97
163735--163774	2	20.0	2	100	0	80	50	0	0	50	1.00
164296--164345	21	2.5	20	87	9	66	34	24	10	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167077--167110	16	2.1	16	100	0	68	11	35	23	29	1.90
174647--174696	21	2.5	20	87	9	66	34	24	10	32	1.88
177422--177455	16	2.1	16	100	0	68	11	35	23	29	1.90
184108--184198	48	1.9	47	88	6	139	28	24	26	20	1.99
184111--184196	24	3.7	23	84	9	111	27	24	26	20	1.99
185108--185148	21	2.0	21	90	0	64	17	26	39	17	1.91
198071--198109	2	19.5	2	100	0	78	51	0	0	48	1.00
198796--198820	12	2.1	12	100	0	50	16	0	0	84	0.63
202896--203042	60	2.5	60	79	4	154	40	6	21	31	1.79
208700--208796	3	32.7	3	96	2	178	34	1	0	64	1.00

Tables:   1   2   3   4   5   6   7