genome.fa.s9266.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009266.1 Hibiscus syriacus cultivar Beakdansim tig00112921_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1543912

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532755--532793	16	2.4	16	95	0	69	7	43	17	30	1.77
535982--536061	38	2.1	38	100	0	160	26	36	20	17	1.94
536721--536757	18	2.1	18	94	0	65	40	18	21	18	1.91
538365--538425	27	2.3	26	81	10	70	26	13	0	60	1.33
538400--538438	16	2.5	16	88	12	55	20	12	2	64	1.40
540455--540499	24	1.9	23	90	4	72	77	0	13	8	0.98
540458--540530	24	3.2	24	80	14	66	76	0	15	8	1.00
540469--540566	40	2.5	38	83	11	117	78	1	14	6	0.99
540452--540611	10	15.1	10	65	21	60	76	0	16	6	1.01
540469--540609	59	2.4	59	79	14	134	77	0	15	6	1.01
540457--540609	20	7.9	18	72	17	96	76	0	16	6	1.03
542532--542773	102	2.4	102	86	4	337	33	16	10	39	1.82
542730--542805	36	2.1	37	95	2	136	35	11	7	44	1.70
542610--542892	138	2.1	137	81	4	318	30	15	11	42	1.82
545440--545488	14	3.5	14	77	0	53	28	32	16	22	1.95
546248--546300	2	26.5	2	100	0	106	50	0	0	49	1.00
549809--549896	13	6.2	14	68	23	51	34	10	2	53	1.47
549809--549868	22	2.7	22	79	5	68	33	11	1	53	1.47
549874--549924	24	2.2	23	85	3	66	39	5	1	52	1.37
550009--550448	2	223.0	2	64	22	123	44	4	3	47	1.40
550011--550163	49	3.1	48	78	13	127	42	5	1	50	1.35
550103--550203	49	2.1	49	84	3	132	47	3	1	46	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550260--550448	93	2.1	93	82	8	228	44	4	5	44	1.47
555532--555603	33	2.2	33	94	0	126	33	2	15	48	1.59
559157--559208	24	2.1	25	85	3	70	23	9	15	51	1.72
559284--559726	159	2.7	160	86	4	597	19	12	30	37	1.89
568754--569002	135	1.8	135	84	3	340	34	13	20	31	1.92
571656--571701	24	1.9	24	95	0	83	26	4	32	36	1.76
573558--573603	19	2.4	19	96	0	83	26	8	6	58	1.52
574125--574150	11	2.4	11	100	0	52	15	19	0	65	1.27
575940--575978	20	1.9	21	89	5	62	2	46	0	51	1.14
593479--593523	15	3.0	15	96	0	81	57	6	6	28	1.50
594708--595339	130	4.9	129	76	8	457	29	16	20	32	1.95
594707--595339	260	2.4	259	79	9	621	29	16	20	33	1.95
606509--606613	35	3.0	35	73	8	113	35	19	18	27	1.94
606489--606616	35	3.6	35	71	6	105	36	17	17	28	1.93
607703--607762	27	2.2	27	84	0	75	30	13	10	46	1.75
607712--607763	27	1.9	27	92	0	86	28	15	11	44	1.81
608732--608782	20	2.6	19	87	12	68	31	19	21	27	1.97
608750--608935	95	1.9	96	86	3	268	32	16	23	27	1.96
609379--609950	45	12.8	45	88	2	810	37	10	22	29	1.87
610738--610795	22	2.5	23	83	10	66	36	22	24	17	1.95
612740--612867	35	3.6	35	72	6	123	35	19	16	28	1.94
612810--612878	35	2.0	35	91	0	111	34	18	18	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613949--614007	27	2.2	27	84	3	75	27	15	10	47	1.77
616557--616695	35	3.9	35	77	7	147	34	20	18	26	1.96
616555--616695	71	2.0	71	88	0	210	34	21	18	26	1.96
617749--617808	27	2.2	27	84	0	75	28	15	11	45	1.81
618214--618252	18	2.2	18	86	13	55	48	10	12	28	1.74
619423--619484	27	2.3	27	80	5	72	6	25	1	66	1.25
620374--620413	21	1.9	22	90	10	66	10	10	40	40	1.72
628299--628345	3	15.7	3	81	0	58	57	0	6	36	1.24
628298--628345	12	4.0	12	83	0	69	56	0	8	35	1.30
631492--631538	17	2.8	17	71	9	51	57	8	4	29	1.48
635466--635559	20	4.7	20	80	7	91	31	25	19	23	1.98
636115--636156	19	2.2	19	91	0	66	52	26	16	4	1.63
636152--636322	39	4.6	38	78	10	172	12	21	22	44	1.85
636152--636322	19	9.1	19	82	10	181	12	21	22	44	1.85
636641--636767	33	3.9	32	86	8	184	15	22	18	42	1.89
636641--636766	66	1.9	66	96	0	234	15	23	19	42	1.89
637794--637846	20	2.7	20	93	0	88	26	20	28	24	1.99
637855--637908	20	2.7	20	97	0	99	25	18	24	31	1.97
637795--637911	61	1.9	61	85	0	162	23	17	24	33	1.97
637795--637929	61	2.2	61	81	2	155	22	20	24	32	1.98
649628--649659	3	10.7	3	93	0	55	65	0	3	31	1.08
650771--650797	14	1.9	14	100	0	54	59	0	3	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651223--651253	15	2.1	15	93	0	53	70	0	0	29	0.87
652506--652553	3	16.3	3	91	4	80	62	2	0	35	1.07
652779--653156	102	3.7	102	86	0	540	33	15	22	28	1.95
653182--653864	137	5.0	137	88	1	963	26	16	25	31	1.97
653182--653864	138	5.0	138	88	0	967	26	16	25	31	1.97
653967--654198	62	3.8	61	82	5	207	34	13	23	28	1.93
653907--654198	124	2.3	128	80	7	326	34	13	23	28	1.93
654286--654344	29	2.0	29	84	12	77	42	6	13	37	1.71
658943--658976	15	2.2	16	89	5	52	52	11	20	14	1.73
658934--658986	23	2.3	23	87	3	72	54	9	20	15	1.68
660151--660184	18	1.9	17	88	5	50	8	29	2	58	1.43
663847--663885	21	1.9	20	89	5	60	33	25	15	25	1.95
673729--673760	16	2.0	16	93	0	55	71	0	0	28	0.86
675014--675086	3	24.0	3	94	2	83	57	0	8	34	1.28
676145--676248	3	35.0	3	94	1	138	61	0	5	32	1.20
677308--677408	3	34.0	3	95	2	141	60	0	5	33	1.21
678467--678558	3	31.0	3	93	2	96	56	0	8	34	1.30
679609--679688	3	27.0	3	94	2	99	58	0	7	33	1.26
680780--680851	3	25.0	3	86	13	107	65	0	0	34	0.93
680780--680851	14	5.0	14	93	3	117	65	0	0	34	0.93
680780--680851	17	4.2	18	86	13	107	65	0	0	34	0.93
681908--681991	3	28.0	3	90	4	80	57	0	8	34	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
683050--683123	3	24.7	3	97	0	94	58	0	8	33	1.28
684188--684270	3	28.0	3	95	2	105	59	0	7	33	1.25
686091--686122	3	10.7	3	100	0	64	31	0	0	68	0.90
688352--688404	18	2.9	18	94	0	88	26	32	15	26	1.95
688684--688728	18	2.4	19	81	11	56	24	20	8	46	1.78
688796--688830	7	5.0	7	89	0	52	54	11	0	34	1.37
694168--694264	13	7.1	14	71	25	66	76	7	15	1	1.06
694178--694264	11	7.2	11	78	11	66	79	5	13	1	0.97
694196--694272	12	6.4	12	73	18	54	77	6	14	1	1.02
695622--695739	38	3.2	39	82	7	138	33	16	14	35	1.90
695738--696146	194	2.1	194	85	4	547	32	12	19	35	1.89
695738--696163	96	4.4	98	85	4	551	32	12	19	35	1.89
696843--697011	65	2.6	67	84	5	236	27	18	13	40	1.89
696958--697185	36	6.3	36	82	0	240	28	21	13	36	1.91
696958--697179	108	2.1	108	82	1	275	27	22	13	36	1.91
703257--703370	41	2.8	41	78	6	115	31	19	21	28	1.97
703346--703496	42	3.7	41	75	17	145	36	19	16	27	1.93
703480--703639	41	3.9	40	80	6	162	35	14	16	33	1.89
703436--703639	82	2.5	81	80	8	216	35	15	16	32	1.90
703520--703641	41	3.0	41	83	6	165	34	14	15	35	1.89
704882--705348	42	11.2	41	84	4	478	27	19	18	34	1.95
707149--707223	35	2.1	35	90	0	114	37	28	25	9	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707301--707380	24	3.4	24	85	3	117	35	20	18	26	1.95
719308--719358	21	2.4	21	76	0	57	39	21	37	1	1.65
719735--719871	43	3.2	42	73	10	107	33	24	18	23	1.97
719807--720101	86	3.4	86	85	6	364	32	23	16	27	1.96
719807--720101	43	6.7	43	79	8	310	32	23	16	27	1.96
719833--720108	128	2.1	128	82	10	342	32	23	16	27	1.96
721362--721409	24	2.0	24	84	4	62	27	12	35	25	1.92
721815--721863	24	2.0	24	100	0	98	59	8	8	24	1.54
722087--722135	18	2.7	18	78	12	55	34	0	2	63	1.06
730322--730421	8	13.0	8	73	23	58	74	0	22	4	0.99

Tables:   1   2   3   4   5   6   7