genome.fa.s9266.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009266.1 Hibiscus syriacus cultivar Beakdansim tig00112921_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1543912

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1194492--1194647	65	2.4	63	86	5	199	31	15	22	30	1.95
1197185--1197257	23	3.4	22	82	12	64	27	21	24	26	2.00
1197202--1197278	23	3.5	22	84	10	95	28	20	23	27	1.99
1198847--1198893	25	2.0	23	83	8	58	57	4	12	25	1.54
1200247--1200300	4	13.0	4	86	3	72	70	0	5	24	1.08
1200247--1200305	30	2.0	30	86	6	84	71	0	5	23	1.06
1200316--1200408	46	2.0	46	89	2	143	52	9	1	36	1.41
1200361--1200616	38	6.6	37	72	19	175	47	7	2	42	1.45
1200361--1200530	75	2.3	75	89	2	261	47	7	1	42	1.42
1200515--1200547	2	17.0	2	93	6	59	48	0	0	51	1.00
1200529--1200613	35	2.3	36	82	11	102	49	5	4	40	1.48
1203173--1203212	21	1.9	21	85	10	55	35	7	2	55	1.42
1205153--1205261	46	2.4	46	92	3	175	37	13	17	31	1.89
1212879--1212914	18	2.0	18	88	0	54	52	0	16	30	1.44
1214374--1214398	2	12.5	2	100	0	50	48	0	0	52	1.00
1218522--1218590	35	2.0	35	94	0	120	28	13	7	50	1.67
1218647--1218674	2	14.0	2	100	0	56	50	0	0	50	1.00
1226345--1226413	23	3.0	23	82	0	84	27	24	26	21	1.99
1226429--1226749	103	3.1	103	96	0	588	36	23	13	26	1.92
1237386--1237414	15	1.9	15	100	0	58	20	13	34	31	1.92
1243820--1244051	114	2.0	114	87	0	329	31	18	15	35	1.92
1262346--1262535	47	4.0	47	95	0	308	38	17	15	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1266285--1266460	83	2.1	82	91	2	282	40	18	16	24	1.91
1267224--1267319	37	2.6	37	83	0	120	41	14	10	33	1.80
1267744--1267790	23	2.0	23	84	15	62	27	2	0	70	0.99
1268035--1268089	21	2.4	23	79	11	60	30	3	0	65	1.10
1268035--1268112	23	3.2	25	76	18	74	29	3	0	66	1.09
1268061--1268128	14	4.7	14	72	16	59	27	2	0	69	1.03
1267995--1268136	23	6.4	22	70	15	71	26	4	1	67	1.17
1268097--1268136	21	1.9	20	85	10	53	20	5	2	72	1.15
1268112--1268162	26	1.9	26	84	11	68	13	5	3	76	1.11
1272531--1272581	15	3.5	15	84	12	54	80	7	11	0	0.90
1272544--1272596	19	2.5	21	85	11	65	79	7	11	1	1.01
1273407--1273469	24	2.8	21	77	13	63	33	11	6	49	1.64
1274199--1275445	106	11.9	106	91	2	1971	33	25	18	22	1.96
1276012--1276073	8	7.5	8	82	7	61	33	1	0	64	1.03
1277054--1277135	3	27.0	3	79	16	71	30	2	2	64	1.19
1277049--1277107	22	2.7	22	100	0	118	23	3	3	69	1.19
1280353--1280389	18	2.0	19	85	15	51	54	10	10	24	1.67
1281576--1281659	43	1.9	44	87	2	125	30	11	22	34	1.90
1281823--1281872	20	2.5	20	76	0	55	16	8	12	64	1.49
1285095--1285157	32	2.0	32	90	6	101	42	15	20	20	1.89
1287557--1287728	70	2.4	72	81	6	188	34	16	20	28	1.95
1288601--1288754	54	2.9	54	78	5	168	42	11	16	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1289118--1289174	22	2.6	22	88	5	80	33	14	15	36	1.88
1290027--1290663	113	5.6	113	87	7	825	37	16	20	25	1.93
1290027--1290663	225	2.8	220	87	6	838	37	16	20	25	1.93
1290471--1290534	20	3.2	20	63	20	53	42	9	23	25	1.84
1290952--1291013	16	4.0	16	78	14	58	16	3	3	77	1.03
1290978--1291057	3	26.3	3	82	9	92	28	1	1	68	1.05
1290968--1291056	34	2.7	34	83	11	98	26	2	1	69	1.07
1292934--1292978	23	1.9	24	82	13	58	51	4	0	44	1.21
1292968--1293015	2	24.5	2	95	4	89	52	0	0	47	1.00
1292716--1293028	150	2.1	149	83	7	375	40	5	5	47	1.50
1297637--1297670	18	2.0	16	88	11	50	47	17	5	29	1.71
1301403--1301471	31	2.2	31	79	5	77	55	8	4	31	1.50
1304121--1304161	20	2.0	21	85	4	57	56	2	0	41	1.13
1307517--1307575	31	1.9	30	89	3	91	13	30	23	32	1.93
1307689--1307776	14	6.2	13	75	19	54	21	3	1	73	1.04
1307709--1307802	3	32.7	3	76	8	97	28	1	0	70	0.94
1307710--1307803	17	5.5	17	81	11	120	28	1	0	70	0.94
1307712--1307809	51	1.9	50	87	6	144	29	2	0	68	1.01
1308320--1308366	19	2.5	19	100	0	94	29	36	27	6	1.82
1313357--1313388	15	2.1	15	94	0	55	25	18	9	46	1.79
1320204--1320250	23	2.0	23	95	0	85	36	10	25	27	1.89
1320596--1320653	11	5.5	11	86	14	86	84	0	8	6	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1320595--1320653	30	1.9	31	93	3	102	83	0	10	6	0.82
1320593--1320653	20	3.0	20	86	13	88	83	0	9	6	0.80
1321000--1321042	22	2.0	22	95	0	77	30	13	2	53	1.53
1321668--1321730	22	2.9	22	92	0	99	36	14	14	34	1.86
1321922--1322448	118	4.5	118	87	8	722	37	16	20	25	1.93
1322796--1322889	3	32.7	3	78	8	106	30	1	0	68	0.97
1323893--1323918	5	5.2	5	100	0	52	23	0	0	76	0.78
1324181--1324237	20	3.0	20	78	14	57	28	0	3	68	1.06
1329802--1329860	30	2.0	30	93	6	102	32	6	16	44	1.74
1329970--1330012	22	1.9	23	85	4	61	27	30	20	20	1.98
1330047--1330120	20	3.7	20	78	3	85	20	27	22	29	1.98
1330477--1330546	34	2.1	32	89	5	104	32	14	28	24	1.94
1348041--1348104	23	2.8	23	85	4	94	28	26	25	20	1.99
1348120--1348337	103	2.1	103	97	0	409	37	24	13	24	1.91
1348887--1348929	21	2.0	21	86	0	59	18	23	25	32	1.97
1350251--1350281	15	2.1	15	93	0	53	45	0	0	54	0.99
1352399--1352482	41	2.0	41	97	0	159	27	19	21	32	1.97
1354392--1354416	12	2.1	12	100	0	50	32	8	16	44	1.76
1355905--1355958	26	2.1	26	85	0	72	40	22	9	27	1.84
1357633--1357671	21	1.9	20	84	5	51	38	17	15	28	1.91
1360247--1360307	23	2.7	23	73	0	59	37	16	26	19	1.93
1367202--1367253	24	2.2	23	86	10	70	34	19	26	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1367236--1367359	23	5.3	23	77	6	81	34	22	23	19	1.96
1367249--1367359	23	4.8	23	80	1	114	35	21	22	20	1.96
1367650--1367685	3	12.0	3	100	0	72	66	0	0	33	0.92
1373853--1373917	18	3.6	18	93	0	112	35	18	21	24	1.96
1392300--1392357	27	2.1	27	81	6	64	8	25	0	65	1.21
1392301--1392362	23	2.6	23	82	14	65	9	24	0	66	1.22
1411661--1413463	911	2.0	910	87	1	2585	29	21	17	31	1.96
1424094--1424136	6	7.2	6	86	0	59	20	16	32	30	1.95
1435274--1435344	32	2.3	30	78	9	79	36	12	0	50	1.41
1435911--1436002	29	3.1	29	73	11	87	39	3	22	34	1.71
1436630--1436699	23	3.0	23	82	0	95	32	25	27	14	1.94
1439014--1439050	19	1.9	19	88	0	56	40	8	16	35	1.78
1443410--1443467	24	2.5	23	78	13	73	15	27	25	31	1.96
1443410--1443480	24	3.0	23	73	17	65	18	23	23	33	1.96
1444777--1444818	18	2.3	18	91	0	66	35	0	16	47	1.47
1445978--1446017	2	20.0	2	100	0	80	50	0	0	50	1.00
1447885--1447925	21	2.0	21	85	9	57	12	31	31	24	1.92
1448958--1449023	24	2.8	24	73	11	73	15	24	28	31	1.95
1450173--1450216	19	2.3	19	100	0	88	36	22	6	34	1.81
1456013--1456043	6	5.2	6	96	0	53	0	45	3	51	1.17
1456470--1456514	19	2.4	18	78	7	54	20	4	0	75	0.97
1458546--1458725	86	2.0	90	90	9	289	31	16	16	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1463810--1463834	2	12.5	2	100	0	50	48	0	0	52	1.00
1468126--1468185	31	1.9	31	93	0	102	41	5	8	45	1.56
1468133--1468208	31	2.5	31	82	4	91	46	9	3	40	1.54
1468208--1468785	22	26.6	22	88	5	840	48	10	0	40	1.42
1468772--1468798	12	2.2	12	100	0	54	55	0	0	44	0.99
1469500--1469548	21	2.3	21	100	0	98	16	20	20	42	1.89
1475835--1475898	24	2.7	24	77	0	65	50	15	9	25	1.74
1476593--1476660	29	2.3	29	77	5	75	42	26	4	26	1.74
1476696--1476772	17	4.4	18	90	6	122	12	23	45	18	1.84
1476696--1476772	35	2.2	35	95	4	138	12	23	45	18	1.84

Tables:   1   2   3   4   5   6   7