Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009267.1 Hibiscus syriacus cultivar Beakdansim tig00112925_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1725308

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1110 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1668913--1669046
64
2.1
62
82
10
157
34
20
19
26
1.96
1669597--1669667
18
3.8
18
80
7
79
19
15
30
33
1.93
1675756--1675889
64
2.1
62
82
10
157
33
19
20
26
1.97
1676449--1676484
18
2.0
18
88
0
54
19
16
33
30
1.94
1678470--1678497
2
14.0
2
100
0
56
50
0
0
50
1.00
1688812--1688886
24
3.1
24
86
3
98
13
10
20
56
1.66
1688836--1688866
14
2.2
14
94
0
53
9
12
22
54
1.67
1689610--1689684
10
7.7
10
69
21
61
9
12
21
57
1.62
1689616--1689680
16
4.1
16
95
0
121
7
12
23
56
1.61
1689750--1689782
16
2.1
16
100
0
66
6
12
24
57
1.57
1689991--1690051
23
2.6
24
74
7
63
65
1
0
32
1.02
1698171--1698234
12
5.9
11
74
22
64
56
0
0
43
0.99
1698183--1698236
3
18.0
3
84
0
72
59
0
0
40
0.98
1698171--1698236
21
3.1
21
87
12
100
57
0
0
42
0.98
1698383--1699172
76
10.4
76
93
1
1323
35
22
18
23
1.96
1698383--1699172
153
5.2
152
93
1
1323
35
22
18
23
1.96
1698383--1699172
229
3.5
228
93
1
1323
35
22
18
23
1.96
1699175--1699494
163
2.0
164
87
1
473
38
13
13
34
1.85
1700009--1700064
23
2.5
22
88
5
94
41
14
10
33
1.80
1700484--1700587
54
1.9
54
88
3
156
25
23
14
37
1.92
1702532--1702862
114
2.9
114
92
0
545
32
18
14
34
1.91
1710164--1710204
17
2.4
18
88
11
61
68
0
2
29
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1710991--1711032
17
2.4
18
76
8
50
64
2
0
33
1.07
1712536--1712577
11
3.7
11
87
3
57
57
0
0
42
0.99
1712548--1712593
3
16.0
3
80
8
51
58
0
0
41
0.98
1712536--1712579
19
2.3
20
85
14
67
56
0
0
43
0.99
1718633--1718657
2
12.5
2
100
0
50
48
0
0
52
1.00
1724614--1724823
113
1.9
114
90
1
341
38
16
15
30
1.89
1724614--1724840
114
2.0
114
88
1
339
37
15
14
32
1.88
1724728--1725308
181
3.3
180
89
6
877
33
16
15
34
1.91

Tables:   1   2   3   4   5   6   7   8   9   10

The End!