genome.fa.s9267.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009267.1 Hibiscus syriacus cultivar Beakdansim tig00112925_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1725308

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  5  of  10  ( 1110 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
829813--829849	14	2.7	14	80	19	51	86	0	8	5	0.70
829735--829838	55	1.9	55	86	4	147	73	1	12	12	1.19
829764--829867	16	6.7	15	70	16	61	77	1	10	9	1.06
830797--831098	105	2.9	105	90	0	478	38	17	20	22	1.93
835328--835367	19	2.0	20	85	4	55	37	12	5	45	1.64
842379--842423	22	2.1	22	87	4	65	26	28	24	20	1.99
842980--843065	23	3.7	23	76	18	97	25	26	27	19	1.99
850010--850158	56	2.7	55	82	8	192	36	7	18	37	1.79
853540--853609	34	2.1	32	89	5	104	21	31	15	31	1.95
853956--854015	20	3.0	20	85	4	86	15	30	36	18	1.91
856036--856069	15	2.3	15	89	0	50	32	29	20	17	1.96
856591--856747	64	2.5	64	76	8	167	27	18	19	35	1.95
856789--856858	21	3.3	21	100	0	140	32	20	18	28	1.96
857639--857686	19	2.5	20	82	3	62	29	12	6	52	1.63
858962--859018	20	2.8	20	89	0	96	14	28	40	17	1.88
858962--859040	37	2.1	39	85	7	108	13	26	40	18	1.89
862235--862375	47	3.0	47	81	6	160	37	17	17	27	1.92
862267--862375	48	2.3	48	84	4	141	37	16	19	26	1.93
867078--867133	29	1.9	29	92	0	94	30	14	3	51	1.59
867106--867345	127	1.9	127	92	0	399	25	13	12	47	1.78
867272--867429	84	1.9	84	89	5	248	20	14	17	47	1.82
867142--867532	211	1.8	213	82	5	497	23	13	15	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
867574--867616	16	2.6	17	78	7	54	32	30	4	32	1.78
874571--874622	19	2.7	19	85	8	61	34	13	5	46	1.67
877906--877973	13	5.2	12	74	19	57	79	4	13	2	1.00
877901--877948	17	2.9	16	90	6	69	77	6	14	2	1.06
877916--877971	28	2.0	29	89	3	87	78	5	12	3	1.05
879111--879224	37	3.1	36	79	6	122	29	19	11	39	1.87
879286--879530	65	3.8	65	92	0	391	25	21	13	39	1.90
879389--879495	29	3.4	29	71	24	101	23	21	14	40	1.91
879409--879530	36	3.6	35	70	24	100	22	20	16	40	1.91
879534--879795	131	2.0	131	84	7	345	30	29	15	25	1.96
882115--882166	14	3.3	14	74	25	50	7	21	46	25	1.77
882114--882160	19	2.5	19	85	0	76	6	21	48	23	1.72
882120--882155	9	3.9	9	85	7	54	8	22	44	25	1.80
887328--887354	14	1.9	14	100	0	54	3	22	51	22	1.63
887359--887439	9	8.4	9	71	12	63	30	27	25	16	1.96
887359--887405	19	2.5	19	89	6	69	27	29	25	17	1.97
888651--888710	28	2.3	27	78	18	72	28	11	3	56	1.51
888658--888713	29	2.0	28	89	3	85	30	14	3	51	1.59
888687--889078	127	3.0	127	88	3	543	23	16	14	46	1.83
889730--889773	18	2.4	19	81	14	56	36	9	0	54	1.32
890290--890328	20	2.0	20	90	5	62	43	5	2	48	1.38
890461--890497	18	2.1	18	100	0	74	67	0	16	16	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
891641--891668	4	7.0	4	100	0	56	0	25	0	75	0.81
904307--904369	31	2.0	31	84	6	83	25	17	20	36	1.94
906096--907061	479	2.0	479	99	0	1914	36	19	20	23	1.95
911406--911443	20	1.9	20	88	0	58	26	36	26	10	1.89
913594--913626	16	2.1	16	100	0	66	36	0	18	45	1.49
915083--915134	21	2.4	21	80	3	59	28	23	23	25	1.99
915093--915133	21	1.9	21	90	5	64	26	26	24	21	2.00
915379--915558	30	6.1	30	75	3	141	20	13	6	58	1.58
923473--923551	23	3.6	23	68	14	58	50	10	21	17	1.75
925295--925342	2	24.0	2	100	0	96	50	0	0	50	1.00
925970--926021	20	2.5	20	90	9	79	23	17	19	40	1.91
925969--926033	34	1.9	34	87	0	94	21	18	21	38	1.93
939141--939314	92	1.9	93	88	5	264	28	14	12	44	1.82
939951--939983	16	2.1	16	100	0	66	57	24	12	6	1.57
940050--940124	10	7.7	10	69	21	61	57	21	12	9	1.62
940054--940118	16	4.1	16	95	0	121	56	23	12	7	1.61
940869--940924	14	4.3	14	73	17	57	55	23	10	10	1.65
940849--940923	24	3.1	24	84	3	89	57	20	9	13	1.63
941609--941679	22	3.2	23	62	22	60	61	7	8	22	1.48
941606--941688	44	1.9	43	97	2	157	59	6	12	22	1.55
942420--942465	23	2.0	24	82	4	58	54	0	2	43	1.12
958599--958627	13	2.1	14	93	6	51	58	3	0	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
960896--960954	14	4.2	14	75	16	59	76	3	6	13	1.12
960916--960958	9	4.7	9	78	16	52	79	2	2	16	0.95
961017--961061	2	22.5	2	100	0	90	51	0	0	48	1.00
961149--961225	41	1.9	39	86	5	109	48	6	28	16	1.71
961613--961648	18	2.1	18	89	5	56	66	2	5	25	1.27
963798--964425	106	6.0	106	82	5	764	24	19	22	34	1.96
964042--964425	200	1.9	200	90	1	617	24	18	21	36	1.95
972729--972804	5	15.0	5	70	15	50	73	5	5	15	1.19
972894--972950	2	28.5	2	100	0	114	50	0	0	49	1.00
972978--973028	24	2.0	24	88	7	75	66	0	7	25	1.18
973080--973123	23	1.9	23	85	0	61	72	0	4	22	1.02
973603--973674	35	2.1	35	94	0	126	27	19	12	40	1.88
974110--974156	3	15.0	3	87	12	60	34	0	0	65	0.93
977714--977910	96	2.1	96	85	1	261	25	12	20	41	1.87
994743--995075	114	2.9	114	84	3	405	35	15	21	28	1.93
995392--995446	27	2.1	25	90	6	83	43	1	0	54	1.10
996612--996654	22	2.0	22	90	9	70	20	4	0	74	1.00
997513--997570	2	29.0	2	100	0	116	50	0	0	50	1.00
997833--997858	13	2.0	13	100	0	52	38	7	7	46	1.61
998673--998743	23	3.1	23	83	2	81	39	14	33	12	1.83
999272--999323	27	2.0	26	82	14	63	67	1	5	25	1.23
1003199--1003233	3	11.7	3	88	11	54	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003626--1003732	42	2.6	41	73	14	110	31	20	20	27	1.97
1003532--1004050	255	2.0	253	88	2	756	34	15	16	33	1.91
1004078--1004180	42	2.5	42	79	1	118	34	17	21	26	1.95
1003818--1004246	197	2.2	197	88	2	621	34	16	18	31	1.93
1003565--1004439	451	1.9	450	89	2	1344	33	16	17	32	1.93
1004410--1004461	20	2.7	19	88	5	77	36	23	19	21	1.95
1005620--1005647	12	2.3	12	100	0	56	32	0	14	53	1.41
1006169--1006221	2	26.5	2	96	0	97	49	1	0	49	1.12
1016202--1016247	20	2.3	19	85	14	58	50	8	15	26	1.73
1031636--1031676	18	2.3	18	91	4	66	39	19	19	21	1.93
1032004--1032043	12	3.5	12	90	6	57	32	5	5	57	1.42
1035840--1035905	32	2.1	32	100	0	132	34	9	25	30	1.87
1038117--1038154	18	2.2	18	90	4	60	36	21	21	21	1.95
1038752--1038828	24	3.2	24	80	12	79	27	25	16	29	1.97
1038773--1038840	24	2.8	24	72	12	68	25	23	22	29	1.99
1040331--1040380	20	2.4	21	86	3	66	38	12	18	32	1.87
1042002--1042034	15	2.1	16	88	5	50	51	33	3	12	1.54
1044526--1044560	16	2.2	17	90	10	56	40	11	11	37	1.77
1046819--1046904	34	2.5	34	96	0	163	37	0	0	62	0.95
1046803--1046891	25	3.6	25	71	15	62	39	0	0	60	0.97
1059123--1059161	19	2.2	19	86	13	57	33	7	17	41	1.79
1064111--1064185	23	3.2	24	83	5	100	44	13	14	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1064568--1064596	2	14.5	2	100	0	58	0	48	0	51	1.00
1068327--1068382	3	19.0	3	76	10	53	37	0	0	62	0.95
1068327--1068370	15	2.9	15	89	3	70	40	0	0	59	0.98
1069683--1069780	22	4.4	23	75	17	82	40	2	1	56	1.18
1069721--1069798	21	3.8	20	75	11	68	37	1	1	60	1.13
1069693--1069780	43	2.1	43	93	6	153	42	2	0	55	1.12
1069883--1069921	2	20.5	2	84	10	55	51	0	0	48	1.00
1071717--1071751	14	2.4	14	90	4	52	22	0	0	77	0.78
1071868--1071931	17	3.4	17	70	25	56	42	3	0	54	1.16
1071872--1071941	20	3.2	24	73	26	91	40	2	0	57	1.14

Tables:   1   2   3   4   5   6   7   8   9   10