genome.fa.s9267.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009267.1 Hibiscus syriacus cultivar Beakdansim tig00112925_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1725308

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1110 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437098--437159	27	2.3	29	78	13	69	43	1	6	48	1.38
441681--441810	20	6.4	20	87	5	199	28	26	20	23	1.99
442643--442696	24	2.2	24	90	0	81	22	18	18	40	1.91
445106--445312	20	10.7	20	79	7	221	33	22	19	24	1.97
445103--445312	60	3.6	60	79	10	247	33	21	19	24	1.97
445447--445526	30	2.4	34	76	20	96	56	15	2	26	1.52
445462--445527	30	2.2	30	94	0	114	56	13	1	28	1.47
447466--447509	20	2.2	20	95	0	79	52	20	11	15	1.74
447476--447543	20	3.4	20	79	0	55	41	23	14	20	1.89
447571--447728	74	2.1	74	92	0	262	18	21	23	36	1.95
447569--447728	20	8.6	20	71	15	110	18	21	23	36	1.95
449725--449792	20	3.5	20	83	2	84	35	25	20	19	1.96
450151--450220	22	3.2	22	87	4	106	22	15	42	18	1.88
450372--450497	20	6.2	20	83	5	164	24	19	27	27	1.99
450372--450497	61	2.1	60	85	10	168	24	19	27	27	1.99
450363--450518	81	1.9	81	89	0	231	24	21	26	27	1.99
450527--450599	21	3.5	21	90	3	103	31	19	21	27	1.97
450646--450701	19	2.9	19	86	0	85	23	14	26	35	1.93
451565--451702	2	71.0	2	68	18	78	44	3	5	47	1.42
451613--451691	17	4.6	18	72	24	64	45	5	7	41	1.54
451760--451804	22	2.0	22	100	0	90	26	17	0	55	1.42
452307--452343	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454010--454345	167	2.0	169	98	1	658	27	17	26	28	1.97
459707--459880	87	2.0	87	100	0	348	34	21	17	26	1.95
460849--461192	171	2.0	171	97	0	643	36	13	20	29	1.91
466345--466420	29	2.7	29	87	2	100	31	18	22	27	1.97
474022--474188	81	2.1	80	85	1	217	43	8	9	38	1.68
474213--474271	29	2.0	29	96	0	109	45	11	10	32	1.74
474434--474471	16	2.3	17	86	4	51	52	2	0	44	1.14
474859--474921	30	2.2	29	88	5	92	26	7	26	38	1.84
474859--474930	29	2.5	30	86	8	96	27	6	25	40	1.81
475183--475300	20	5.8	20	74	4	119	16	21	22	38	1.93
475207--475319	20	5.6	21	71	6	99	19	18	25	36	1.95
475187--475384	41	5.0	41	89	7	270	20	18	22	37	1.94
476080--476305	41	5.7	40	77	15	202	37	23	20	19	1.94
476196--476264	19	3.5	19	73	11	75	39	21	20	18	1.93
476214--476285	22	3.4	22	73	11	87	37	25	19	18	1.94
476076--476308	116	2.0	115	88	5	344	36	23	20	19	1.95
476249--476328	20	3.9	20	82	9	99	40	23	23	12	1.89
476120--476418	61	4.9	60	71	18	199	36	23	20	19	1.95
478059--478134	9	8.3	9	80	7	64	55	0	0	44	0.99
478063--478164	9	11.4	8	73	16	60	56	0	0	43	0.99
478059--478164	18	5.9	18	75	12	85	55	0	0	44	0.99
478066--478136	18	3.8	18	83	9	90	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478069--478164	27	3.5	28	80	11	126	57	0	0	42	0.98
483292--483416	62	2.0	62	100	0	250	44	20	8	27	1.79
487148--487207	31	1.9	32	89	3	95	6	0	26	66	1.16
487808--487853	20	2.3	19	85	11	56	34	10	4	50	1.57
487857--487934	20	3.5	21	73	20	77	42	7	1	48	1.40
488160--488642	181	2.7	181	85	3	618	32	18	20	28	1.96
491057--491097	21	1.9	22	85	5	57	14	17	7	60	1.55
500118--500160	13	3.3	13	87	6	61	46	9	11	32	1.72
500637--500738	44	2.3	44	89	0	150	26	19	23	30	1.98
508671--508729	23	2.6	23	86	0	82	18	25	27	28	1.98
510881--510920	21	1.9	21	89	0	62	22	27	27	22	1.99
511568--511672	38	2.7	40	78	10	101	33	15	2	48	1.59
512071--512142	36	2.0	36	97	0	135	20	26	13	38	1.90
519910--519958	11	4.5	11	82	5	64	20	0	16	63	1.31
519929--519966	10	3.7	10	86	6	58	10	0	26	63	1.27
519923--519966	21	2.1	21	100	0	88	13	0	22	63	1.29
522221--522344	63	2.0	63	82	6	153	25	27	28	18	1.98
523226--523282	17	3.4	17	97	0	105	17	24	40	17	1.91
523278--523327	9	5.1	10	74	13	50	28	30	22	20	1.98
523276--523327	20	2.7	19	87	3	68	26	28	25	19	1.98
529521--529645	31	4.0	31	69	4	81	26	28	28	17	1.98
529522--529645	63	2.0	63	80	6	144	25	28	28	17	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530534--530607	17	4.4	17	89	0	112	20	22	37	18	1.94
530603--530652	9	5.1	10	74	13	50	28	30	22	20	1.98
530602--530652	20	2.6	19	87	3	66	27	29	23	19	1.98
531568--531624	21	2.7	22	83	5	73	14	1	22	61	1.42
531568--531616	11	4.5	11	84	5	73	16	2	20	61	1.44
533779--533907	59	2.2	59	95	0	231	53	17	6	21	1.67
535859--535990	66	2.0	66	98	0	255	25	18	31	25	1.98
538763--538807	21	2.1	21	100	0	90	33	8	28	28	1.87
545783--545810	2	14.0	2	100	0	56	50	0	0	50	1.00
548385--548445	26	2.3	26	94	0	104	19	42	3	34	1.68
551146--551195	25	2.0	25	100	0	100	32	16	36	16	1.90
551751--551922	5	33.4	5	87	12	251	40	0	0	59	0.97
552265--552304	2	20.0	2	100	0	80	50	0	0	50	1.00
552302--552448	4	36.8	4	100	0	294	25	0	24	50	1.50
554030--554062	16	2.0	17	88	5	50	42	6	9	42	1.61
556121--556184	25	2.6	23	76	13	65	12	12	29	45	1.79
556204--556282	3	26.3	3	97	0	149	65	0	0	34	0.93
559916--559965	24	2.1	24	81	7	57	44	12	0	44	1.41
562080--562225	3	48.7	3	98	0	283	33	0	32	32	1.63
564091--564149	30	2.0	29	83	9	75	54	8	10	27	1.63
568051--568092	2	21.0	2	100	0	84	0	50	0	50	1.00
568092--568118	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568323--568355	2	16.5	2	100	0	66	48	0	0	51	1.00
575623--575707	44	1.9	44	97	0	161	40	11	15	32	1.83
577728--577834	50	2.1	50	84	0	142	28	10	29	31	1.90
580521--580560	19	2.0	20	90	4	64	37	5	15	42	1.68
580616--580688	21	3.4	21	94	1	119	23	28	21	26	1.99
581544--581664	32	3.9	32	86	8	144	35	20	16	27	1.94
583510--583624	50	2.3	50	92	0	185	28	9	32	29	1.89
585507--585557	20	2.5	21	77	3	59	43	5	17	33	1.73
595133--595170	3	12.7	3	89	10	60	36	0	0	63	0.95
595133--595181	24	2.0	24	88	0	71	36	2	0	61	1.08
596212--596247	17	2.1	17	100	0	72	16	0	38	44	1.48
596852--596907	20	2.7	21	83	2	69	25	21	30	23	1.99
601225--601280	26	2.2	24	79	14	60	37	1	8	51	1.44
607542--607590	22	2.2	23	85	7	73	36	8	14	40	1.75
608552--608825	83	3.3	82	87	3	363	41	12	22	23	1.88
608647--608776	37	3.3	37	68	21	100	43	13	23	20	1.86
609084--609151	11	5.9	12	73	19	56	48	0	0	51	1.00
609092--609151	18	3.7	18	75	22	60	48	0	0	51	1.00
611137--611186	20	2.5	20	76	0	55	42	4	0	54	1.19
611561--611605	21	2.1	21	83	0	54	71	4	0	24	1.05
612497--612693	75	2.6	74	89	0	286	34	21	16	27	1.94
616058--616106	3	16.3	3	100	0	98	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620403--620445	16	2.7	16	82	7	52	41	2	4	51	1.35
633312--633337	10	2.6	10	100	0	52	42	7	23	26	1.81
644939--644972	16	2.1	16	89	10	52	58	14	0	26	1.36
644928--645191	131	2.0	131	84	2	343	37	17	12	33	1.86
645872--645898	13	2.1	13	100	0	54	33	0	0	66	0.92
646700--646781	43	1.9	43	80	14	98	60	1	2	35	1.17
646987--647026	19	2.1	19	86	9	55	37	2	2	57	1.26
650823--650859	19	1.9	19	94	0	65	35	8	21	35	1.83
650836--650984	74	2.0	74	100	0	298	44	8	14	32	1.75
655329--655365	19	1.9	19	94	0	65	35	8	21	35	1.83

Tables:   1   2   3   4   5   6   7   8   9   10