genome.fa.s109.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold109
Parameters: 2 7 7 80 10 50 1000
Length:  1855911

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  1  of  13  ( 1516 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565--606	15	2.7	15	85	7	57	47	0	0	52	1.00
2744--2776	15	2.2	15	94	0	57	63	0	0	36	0.95
5957--6002	7	6.7	7	97	2	85	58	0	0	41	0.98
6367--6454	45	2.0	45	84	8	117	55	1	0	43	1.07
7178--7223	19	2.5	18	78	3	56	56	0	0	43	0.99
7178--7225	20	2.6	18	77	9	53	56	0	0	43	0.99
9379--9417	14	2.7	14	84	4	51	58	2	5	33	1.33
20607--20655	3	16.3	3	100	0	98	67	0	0	32	0.91
22710--22752	17	2.4	19	80	7	54	53	0	4	41	1.21
23632--23668	3	12.3	3	100	0	74	67	0	0	32	0.91
25369--26462	132	8.3	132	90	2	1695	32	15	20	30	1.94
27251--27338	24	3.4	25	75	9	70	59	0	0	40	0.98
28359--28417	21	2.7	22	79	10	68	38	1	1	57	1.19
29072--29252	92	2.0	92	92	0	299	35	17	11	35	1.86
29293--29335	3	14.7	3	90	4	52	62	0	6	30	1.21
30470--30494	13	1.9	13	100	0	50	48	4	8	40	1.51
33285--33635	174	2.0	175	96	2	643	29	13	12	43	1.82
33965--34223	50	5.2	50	95	0	446	30	19	20	29	1.97
38614--38872	50	5.2	50	94	0	446	29	19	20	29	1.97
40446--40488	3	14.3	3	95	0	77	67	0	2	30	1.03
40294--40662	200	1.9	201	84	2	512	40	10	10	39	1.74
41363--41398	17	2.1	17	94	0	63	19	11	33	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43125--43201	32	2.5	30	83	8	93	57	1	0	41	1.07
45052--45086	18	1.9	18	88	11	54	28	0	0	71	0.86
45281--45351	32	2.2	32	83	11	92	22	14	4	59	1.52
46144--46219	37	2.1	37	89	0	116	25	19	25	30	1.98
54281--54482	48	4.2	48	86	3	266	36	16	26	20	1.94
54638--55439	28	28.2	28	87	6	1008	24	17	28	29	1.97
54638--55593	28	33.8	27	83	9	837	25	16	28	28	1.97
54974--55880	82	10.9	82	87	4	686	26	15	30	27	1.96
54789--55888	28	39.5	28	87	7	890	26	15	30	27	1.96
54657--55888	56	22.0	56	85	6	969	26	16	29	27	1.97
57186--57250	34	1.9	34	84	3	87	6	13	7	72	1.27
63756--63854	37	2.7	37	87	3	137	22	20	26	31	1.98
66476--66570	27	3.7	26	84	6	104	24	7	22	46	1.77
66626--66656	13	2.4	13	94	0	53	9	41	6	41	1.63
69107--69152	21	2.1	22	84	4	58	30	19	30	19	1.97
71008--71109	27	3.9	26	78	8	102	22	7	22	47	1.77
71042--71111	24	2.8	24	80	10	70	21	8	22	47	1.78
72606--72637	3	10.7	3	93	0	55	31	0	3	65	1.08
76800--76853	28	1.9	28	84	0	72	37	1	1	59	1.19
77231--77366	23	5.9	22	68	14	78	56	0	0	41	1.09
77266--77366	31	3.3	29	78	13	89	57	0	0	41	1.05
77421--77452	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77819--77855	5	7.4	5	87	0	56	40	0	2	56	1.13
78793--78941	74	2.0	75	93	1	255	35	10	13	40	1.79
81722--81747	2	13.0	2	100	0	52	50	0	0	50	1.00
86312--86351	17	2.4	17	87	4	55	42	10	2	45	1.51
91761--91793	16	2.1	15	94	5	57	54	0	0	45	0.99
92102--92146	13	3.4	13	77	17	56	42	0	0	57	0.98
92092--92134	21	2.0	21	86	9	59	44	0	0	55	0.99
92093--92140	6	7.3	6	80	17	51	41	0	0	58	0.98
92311--92355	23	2.0	23	86	0	63	60	0	4	35	1.17
93010--93042	17	2.0	17	88	5	50	42	0	0	57	0.98
93624--93697	6	12.2	6	76	8	69	51	1	2	44	1.24
93691--93775	19	4.3	19	67	11	55	52	1	1	44	1.16
94831--94877	14	3.3	14	85	5	58	55	0	0	44	0.99
94854--94890	7	5.6	7	87	12	60	43	0	0	56	0.99
94981--95013	13	2.5	13	95	0	57	33	3	0	63	1.10
95214--95254	13	3.2	13	79	6	57	41	7	0	51	1.30
95394--95420	2	13.5	2	100	0	54	48	0	51	0	1.00
101741--101781	2	20.5	2	100	0	82	48	0	0	51	1.00
101863--101913	19	2.7	19	96	0	93	29	3	23	43	1.72
102348--102373	3	8.7	3	100	0	52	69	0	0	30	0.89
102493--102534	17	2.4	18	80	11	52	61	0	0	38	0.96
103107--103163	2	30.0	2	82	10	66	49	5	0	45	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103936--103997	23	2.7	23	80	16	74	37	1	3	58	1.24
106481--106506	2	13.0	2	100	0	52	50	0	0	50	1.00
107688--107718	2	15.5	2	100	0	62	51	0	0	48	1.00
112171--112212	2	21.0	2	100	0	84	50	0	0	50	1.00
112705--112735	3	10.7	3	93	6	55	67	0	32	0	0.91
112912--112951	18	2.1	20	86	9	57	42	0	2	55	1.13
112887--112936	25	2.0	26	88	4	75	36	0	0	64	0.94
113225--113258	14	2.5	13	86	9	50	58	0	0	41	0.98
113315--113372	18	3.1	19	80	12	66	48	0	1	50	1.11
113324--113382	14	4.4	13	74	20	50	49	0	0	50	1.00
113321--113438	5	24.6	5	68	20	56	42	0	1	55	1.09
113310--113377	23	2.9	23	82	10	68	48	0	1	50	1.10
113321--113389	18	3.8	19	80	14	74	46	0	1	52	1.09
113346--113420	27	2.7	28	73	15	75	40	0	2	57	1.13
113327--113438	18	6.4	18	71	22	62	41	0	1	56	1.10
113326--113440	43	2.7	43	81	10	121	40	0	1	57	1.09
116514--116563	24	2.1	24	96	0	91	12	30	6	52	1.62
118339--118392	21	2.5	22	82	11	60	55	1	1	40	1.21
122627--122661	2	17.5	2	100	0	70	0	48	0	51	1.00
124095--124155	22	2.7	22	69	20	63	32	3	1	62	1.21
124323--124361	2	20.0	2	84	5	53	51	0	5	43	1.24
124521--124589	24	3.0	23	76	16	70	50	1	1	46	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125065--125116	18	2.8	19	77	11	54	34	0	0	65	0.93
130130--130175	20	2.3	21	82	17	62	45	0	2	52	1.13
130131--130196	31	2.1	30	83	13	80	39	0	1	59	1.07
130765--130800	18	2.1	18	89	5	56	58	0	0	41	0.98
131210--131235	2	13.0	2	100	0	52	50	0	0	50	1.00
131467--131562	25	3.7	26	71	19	83	55	0	1	43	1.06
131493--131534	22	1.9	22	90	9	68	59	0	2	38	1.10
134869--135355	272	1.8	264	86	10	709	48	18	11	22	1.79
135832--135862	15	2.1	14	94	5	53	61	0	0	38	0.96
135922--135987	19	3.3	19	69	24	55	51	3	1	43	1.26
136089--136125	12	3.2	12	82	17	51	51	8	0	40	1.32
138498--138710	74	2.9	69	73	19	177	55	10	0	32	1.40
138516--138721	71	2.8	70	80	10	225	56	10	0	32	1.37
138724--138778	23	2.4	24	79	11	62	63	9	0	27	1.24
139506--139577	22	3.2	22	76	16	67	41	0	0	58	0.98
139600--139645	18	2.6	18	78	0	56	30	2	0	67	1.03
141007--141037	15	2.1	14	94	5	53	61	0	0	38	0.96
141096--141161	19	3.3	19	69	24	55	51	3	1	43	1.26
141263--141299	12	3.2	12	82	17	51	51	8	0	40	1.32
143673--143885	74	2.9	69	73	19	177	55	10	0	32	1.40
143691--143896	71	2.8	70	80	10	225	56	10	0	32	1.37
143899--143953	23	2.4	24	79	11	62	63	9	0	27	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144188--144258	23	3.1	23	78	13	58	64	2	0	32	1.08
144205--144261	23	2.6	21	78	13	60	63	3	0	33	1.12
144571--144642	22	3.2	22	76	16	67	41	0	0	58	0.98
144665--144710	18	2.6	18	78	0	56	30	2	0	67	1.03
146821--146875	21	2.6	22	83	13	71	36	0	1	61	1.06
146841--146898	21	2.8	20	81	5	62	46	0	0	53	1.00
147229--147266	13	3.0	13	80	7	51	60	0	0	39	0.97
147229--147274	25	1.9	24	86	8	67	60	0	0	39	0.97
147611--147641	3	10.3	3	100	0	62	64	0	0	35	0.94
148140--148187	23	2.0	24	88	11	73	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13