genome.fa.s109.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold109
Parameters: 2 7 7 80 10 50 1000
Length:  1855911

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1516 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
899832--900134	74	4.2	72	80	6	328	52	15	2	30	1.55
900270--900327	28	2.1	28	86	0	80	29	24	18	27	1.98
901346--901418	20	3.6	20	77	3	92	36	13	17	31	1.89
901364--901439	21	3.7	21	78	3	100	43	11	15	28	1.83
901346--901439	41	2.3	41	100	0	188	40	12	17	29	1.86
901478--901503	13	2.0	13	100	0	52	38	15	15	30	1.88
905565--905603	15	2.6	15	91	0	60	51	15	20	12	1.76
907610--907688	20	3.7	21	75	15	72	26	13	15	44	1.84
907675--907713	13	3.0	13	96	0	69	30	17	15	35	1.91
910151--910223	20	3.6	20	77	3	92	36	13	17	31	1.89
910169--910244	21	3.7	21	78	3	100	43	11	15	28	1.83
910151--910244	41	2.3	41	100	0	188	40	12	17	29	1.86
910283--910308	13	2.0	13	100	0	52	38	15	15	30	1.88
914925--914988	32	2.0	32	100	0	128	15	31	21	31	1.95
916139--916174	13	2.7	13	91	4	54	61	0	0	38	0.96
916139--916211	27	2.8	26	80	17	82	56	1	0	42	1.08
916155--916197	21	2.0	22	86	4	61	55	2	0	41	1.12
916144--916214	12	5.6	12	69	12	52	54	1	0	43	1.08
917824--917860	17	2.2	17	90	0	56	35	0	2	62	1.10
917851--917895	14	3.2	14	84	6	56	57	0	2	40	1.11
918211--918239	14	2.0	15	93	6	51	41	0	3	55	1.17
918748--918801	2	27.5	2	96	3	101	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
920082--920142	22	2.7	21	80	12	59	14	4	8	72	1.26
923663--924372	91	7.9	91	76	8	533	31	14	13	40	1.85
923945--924704	87	8.8	87	73	11	346	30	15	13	39	1.86
924295--924447	75	2.1	74	89	1	234	28	18	14	39	1.89
924369--924710	88	3.9	88	82	4	368	30	18	13	38	1.89
924369--924710	87	3.9	88	82	3	366	30	18	13	38	1.89
925027--925076	15	3.3	15	74	0	55	14	20	20	46	1.84
925684--925735	19	2.8	18	83	11	70	73	15	1	9	1.18
926282--926306	12	2.1	12	100	0	50	0	8	0	92	0.40
927068--927116	19	2.4	21	78	21	59	63	2	6	28	1.30
927065--927116	20	2.5	22	84	12	74	63	1	5	28	1.28
926987--927103	28	4.2	28	69	10	69	57	3	4	35	1.35
927529--927579	16	3.2	16	78	8	50	35	0	0	64	0.94
930769--930820	6	8.3	6	77	8	50	59	1	0	38	1.08
931786--931829	22	2.0	23	90	4	72	36	11	4	47	1.60
931969--932008	21	1.9	21	90	10	64	62	0	2	35	1.09
933449--933849	155	2.6	154	77	5	348	39	16	12	30	1.86
933501--933872	155	2.4	155	80	6	398	39	17	12	30	1.87
934444--934737	145	2.0	144	84	4	387	43	19	12	24	1.85
935220--935340	2	60.0	2	74	11	95	47	2	5	43	1.40
935427--935455	14	2.0	15	93	6	51	44	6	6	41	1.58
935447--935560	15	7.4	15	69	23	58	59	7	7	24	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935434--935561	31	4.2	31	85	1	168	58	7	7	25	1.53
935508--935558	16	3.2	16	76	13	52	64	5	11	17	1.45
939185--939390	51	4.3	51	77	13	186	44	11	13	30	1.79
939287--939361	20	3.8	19	87	1	105	41	13	12	33	1.81
940437--940476	20	2.0	20	90	0	62	40	5	7	47	1.54
953119--953146	14	2.0	14	100	0	56	71	0	14	14	1.15
956770--956799	11	2.6	12	89	10	53	53	0	0	46	1.00
956791--956846	22	2.5	23	82	11	71	37	0	3	58	1.15
957036--957080	23	1.9	24	86	4	65	66	2	0	31	1.04
958195--958248	21	2.7	20	80	5	72	70	0	0	29	0.88
958192--958238	23	2.0	23	83	8	58	70	0	0	29	0.88
959715--959779	33	2.0	32	85	8	87	49	6	1	43	1.37
962659--962708	2	25.0	2	95	0	91	48	0	2	50	1.12
963113--963167	16	3.4	16	92	0	83	49	7	0	43	1.30
963113--963167	4	13.8	4	92	0	74	49	7	0	43	1.30
963485--963529	15	2.9	16	75	24	51	44	0	0	55	0.99
964050--964088	2	19.5	2	100	0	78	48	0	0	51	1.00
965208--965274	32	2.2	30	83	5	80	31	5	8	53	1.56
965627--965663	19	1.9	19	89	10	58	59	0	0	40	0.97
965924--965957	18	1.9	17	88	5	50	38	0	0	61	0.96
965964--966024	27	2.2	27	83	13	72	54	0	0	45	1.00
965982--966055	23	3.6	21	76	16	66	58	2	0	39	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
965991--966057	21	3.1	21	70	18	57	59	2	0	37	1.13
966326--966364	18	2.0	20	85	9	55	43	0	0	56	0.99
966627--966655	14	2.1	14	93	6	51	48	6	0	44	1.29
967087--967127	21	2.0	20	86	13	57	41	0	0	58	0.98
968087--968172	20	4.4	20	76	12	81	63	2	0	33	1.07
968138--968185	24	2.0	24	84	8	62	58	4	0	37	1.18
971242--971314	33	2.2	33	82	7	94	45	4	4	46	1.41
973561--973588	2	14.0	2	100	0	56	50	0	0	50	1.00
974045--974146	32	3.1	32	75	16	91	51	1	1	44	1.23
974273--974311	19	2.1	19	85	0	51	66	0	33	0	0.92
974967--975023	16	3.5	17	79	11	57	52	1	0	45	1.11
975293--975354	13	5.2	12	74	16	58	46	0	0	53	1.00
975279--975325	15	3.0	15	81	9	58	57	0	0	42	0.98
975371--975418	17	2.9	17	80	17	57	37	0	0	62	0.95
975348--975415	32	2.2	32	82	12	79	41	1	0	57	1.08
982367--982415	13	3.7	13	76	15	55	63	0	0	36	0.95
982374--982414	14	3.0	14	76	16	50	63	0	0	36	0.95
983072--983122	20	2.6	18	80	17	57	41	0	3	54	1.19
985076--985126	26	2.0	26	88	3	77	15	27	11	45	1.81
993694--993760	18	3.7	18	72	18	57	56	2	1	38	1.24
994004--994051	19	2.5	18	77	12	51	58	0	2	39	1.10
995981--996027	18	2.7	17	80	6	58	63	2	6	27	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
996505--996532	2	14.0	2	100	0	56	50	0	0	50	1.00
999448--999485	18	2.1	18	90	0	58	44	15	10	28	1.80
1002202--1002292	46	2.0	46	97	0	173	53	6	23	16	1.66
1002765--1002888	29	4.2	29	82	1	113	37	16	16	29	1.91
1002809--1002955	15	9.9	15	76	8	124	35	19	18	27	1.95
1003413--1003753	68	5.1	68	73	12	202	34	16	24	25	1.95
1003423--1003872	67	6.7	67	74	7	213	34	17	24	23	1.96
1003562--1003817	67	3.8	67	77	1	269	34	18	23	23	1.96
1003524--1003790	135	2.0	135	84	0	354	33	16	25	23	1.96
1003527--1003872	135	2.6	135	80	2	347	33	18	24	23	1.97
1006210--1006258	15	3.3	15	77	5	55	34	20	14	30	1.92
1007951--1008018	29	2.3	29	92	0	109	33	27	14	23	1.94
1007952--1008003	14	3.6	14	69	5	50	32	30	15	21	1.94
1007973--1008145	14	11.9	14	72	11	107	34	22	17	25	1.96
1007951--1008034	29	2.9	28	82	7	78	33	26	16	23	1.96
1007992--1008113	44	2.8	45	81	10	137	33	21	18	27	1.96
1010284--1010328	18	2.9	15	81	18	56	55	2	0	42	1.12
1010283--1010351	32	2.0	36	83	10	92	55	1	0	43	1.08
1010291--1010387	17	5.9	17	69	21	64	57	1	1	40	1.12
1010308--1010388	11	7.5	11	67	19	55	59	0	1	39	1.05
1011523--1011559	5	7.4	5	100	0	74	40	0	0	59	0.97
1016450--1016543	45	2.1	45	82	11	113	50	1	1	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1016467--1016546	22	3.7	21	74	12	65	46	1	0	52	1.08
1016507--1016554	22	2.1	22	84	3	60	37	2	0	60	1.09
1016512--1016555	14	3.1	14	80	6	52	36	2	0	61	1.09
1019780--1019822	21	2.2	19	83	8	50	65	6	6	20	1.41
1022163--1022234	25	2.7	27	72	16	69	65	0	1	33	1.02
1022181--1022241	22	2.8	21	78	7	68	60	0	1	37	1.07
1022257--1022301	17	2.6	17	78	0	54	55	0	2	42	1.12
1022367--1022398	6	5.3	6	96	0	55	28	0	0	71	0.86
1022705--1022807	17	5.9	17	66	13	57	52	0	0	47	1.00
1022705--1022798	36	2.7	34	80	11	118	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13