genome.fa.s109.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold109
Parameters: 2 7 7 80 10 50 1000
Length:  1855911

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1516 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1760955--1761059	51	2.1	51	96	0	192	31	17	13	38	1.88
1772587--1772638	20	2.5	21	87	9	72	34	13	11	40	1.81
1773451--1773484	2	17.0	2	100	0	68	50	0	0	50	1.00
1775365--1775427	21	2.8	22	71	15	56	46	0	1	52	1.10
1777246--1777286	2	20.5	2	100	0	82	48	0	0	51	1.00
1777665--1777706	16	2.5	18	81	14	54	64	0	0	35	0.94
1778254--1778291	19	2.0	20	84	5	51	57	2	0	39	1.12
1778620--1778656	2	18.5	2	88	0	56	45	2	0	51	1.15
1778809--1778868	24	2.5	25	78	10	63	55	1	0	43	1.10
1778920--1778971	22	2.3	23	83	6	63	65	0	5	28	1.16
1779022--1779055	10	3.4	10	87	0	50	52	2	0	44	1.16
1779371--1779412	18	2.4	18	80	4	59	71	7	2	19	1.20
1779740--1779783	2	22.0	2	100	0	88	50	0	0	50	1.00
1781811--1781864	25	2.2	25	83	3	65	48	0	0	51	1.00
1783663--1783720	18	3.4	16	75	15	55	51	0	0	48	1.00
1787151--1787181	16	1.9	16	93	0	53	22	6	0	70	1.09
1789053--1789079	14	1.9	14	100	0	54	88	3	7	0	0.61
1790578--1790627	18	2.7	18	81	6	55	66	6	8	20	1.40
1793248--1793324	33	2.3	33	77	4	84	57	5	2	35	1.35
1793311--1793362	26	2.0	27	92	3	88	55	0	3	40	1.18
1793313--1793363	13	3.9	14	75	12	54	58	0	3	37	1.16
1794390--1794431	16	2.6	16	89	10	68	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1794519--1794552	16	2.1	16	88	0	50	70	2	0	26	1.01
1794965--1795006	21	2.0	22	85	4	59	19	4	2	73	1.12
1795227--1795288	15	3.9	15	81	12	54	33	1	4	59	1.28
1796461--1796519	30	1.9	30	82	6	73	40	0	8	50	1.33
1796924--1796993	23	2.8	25	75	12	65	45	1	1	51	1.18
1796945--1797008	23	3.0	21	76	14	60	48	0	0	51	1.00
1797012--1797081	34	2.1	34	97	0	131	37	5	4	52	1.45
1797231--1797296	16	4.3	15	81	11	62	42	0	1	56	1.08
1797231--1797296	31	2.1	31	83	5	80	42	0	1	56	1.08
1797269--1797348	22	3.7	22	81	5	83	45	2	1	51	1.22
1797231--1797320	15	5.4	15	79	18	81	41	1	2	55	1.19
1797748--1797804	28	2.0	28	100	0	114	22	14	14	49	1.79
1797751--1797811	28	2.2	28	94	2	106	21	11	14	52	1.73
1799053--1799090	2	19.0	2	100	0	76	50	0	0	50	1.00
1800001--1800047	2	23.5	2	100	0	94	48	0	0	51	1.00
1800744--1800832	30	3.0	30	93	0	151	14	24	22	38	1.92
1800873--1800899	3	9.0	3	100	0	54	33	0	0	66	0.92
1806260--1806298	2	19.5	2	100	0	78	48	0	0	51	1.00
1809132--1809161	15	2.0	15	93	0	51	43	0	0	56	0.99
1809624--1809655	16	2.0	16	100	0	64	31	12	6	50	1.65
1814406--1814430	13	1.9	13	100	0	50	32	16	16	36	1.90
1814846--1814889	23	1.9	23	81	9	54	29	4	22	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1815964--1815988	3	8.3	3	100	0	50	36	0	32	32	1.58
1823088--1823216	52	2.5	52	90	0	213	29	17	17	35	1.93
1823088--1823236	52	2.9	51	86	2	199	30	17	17	34	1.93
1823225--1823249	13	1.9	13	100	0	50	36	16	16	32	1.90
1823292--1823352	19	3.6	18	75	25	69	36	16	13	34	1.87
1823287--1823387	32	3.1	32	91	1	157	34	17	12	34	1.88
1823311--1823335	13	1.9	13	100	0	50	32	16	16	36	1.90
1824345--1824671	43	7.2	43	79	12	375	29	18	27	25	1.98
1824233--1824964	49	15.1	49	80	11	755	32	18	25	24	1.97
1824307--1824671	92	3.9	92	93	1	604	29	18	27	24	1.98
1824573--1824965	94	3.9	106	85	10	435	34	17	23	24	1.96
1824970--1825158	32	5.9	31	84	7	227	19	18	32	29	1.96
1824970--1825158	65	3.0	63	86	5	263	19	18	32	29	1.96
1824970--1825154	97	1.9	98	88	5	286	18	18	32	29	1.96
1825166--1825808	34	19.8	33	77	11	600	34	13	32	19	1.91
1825531--1825774	27	8.0	27	75	15	128	34	13	31	20	1.92
1825166--1825818	161	4.0	158	79	11	599	34	13	32	19	1.90
1825747--1825816	34	2.0	36	86	10	101	38	12	30	18	1.88
1825914--1825951	16	2.3	17	86	4	51	26	5	23	44	1.74
1826766--1826807	16	2.7	16	82	10	52	0	11	7	80	0.88
1833996--1834020	13	1.9	13	100	0	50	36	16	16	32	1.90
1837454--1837502	19	2.5	20	87	9	66	30	16	16	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1837551--1837588	13	2.9	13	88	0	58	34	15	15	34	1.90
1839386--1839632	97	2.5	97	86	1	325	30	12	28	27	1.94
1841338--1841369	11	3.1	11	86	13	50	0	21	0	78	0.76
1841342--1841371	15	2.1	15	93	6	53	0	16	0	83	0.65
1845602--1845869	142	1.9	137	81	5	313	43	10	12	34	1.76
1847154--1847199	6	7.8	6	80	4	58	30	0	2	67	1.03
1847287--1847336	26	1.9	26	84	8	66	36	0	2	62	1.07
1851444--1851538	2	47.0	2	85	10	131	48	2	3	46	1.30
1851657--1851703	17	3.1	16	79	17	55	63	2	0	34	1.06
1852802--1852855	26	2.1	26	96	0	99	16	14	27	40	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!