genome.fa.s11.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold11
Parameters: 2 7 7 80 10 50 1000
Length:  5230303

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  5  of  29  ( 3461 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682105--682266	51	3.2	50	79	9	150	37	1	5	56	1.31
682127--682271	50	2.8	51	76	10	136	40	0	4	54	1.27
682237--682302	28	2.4	27	80	7	71	40	1	1	56	1.18
685846--685896	8	6.5	8	77	8	52	80	1	15	1	0.89
685846--685896	22	2.2	22	82	10	50	80	1	15	1	0.89
685888--685932	16	2.8	16	83	12	65	73	0	24	2	0.95
685847--685936	38	2.3	38	80	14	96	75	1	21	2	0.97
685847--685943	23	4.2	22	75	13	81	75	1	20	3	1.00
690254--690477	58	3.9	57	81	4	249	25	34	11	28	1.91
690254--690467	116	1.9	112	86	5	304	26	33	12	28	1.92
695088--695135	20	2.3	20	83	13	62	37	2	0	60	1.09
695088--695135	21	2.3	21	86	10	64	37	2	0	60	1.09
698849--698899	15	3.3	15	77	17	52	60	3	3	31	1.33
698936--698972	19	2.0	19	89	5	58	56	0	0	43	0.99
699082--699265	42	3.8	48	77	17	202	52	4	2	40	1.35
699102--699292	94	2.0	94	87	4	278	51	6	2	39	1.39
699186--699292	51	2.1	53	87	7	157	55	6	0	37	1.32
699571--699628	22	2.6	22	80	0	62	41	13	8	36	1.76
699708--699757	26	1.9	26	83	0	64	30	6	4	60	1.39
700225--700399	51	3.4	50	81	7	199	37	1	5	56	1.29
700691--700752	32	2.0	30	81	12	72	45	0	1	53	1.10
709550--709623	20	3.6	20	75	7	67	43	13	8	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709546--709605	22	2.9	22	82	7	72	45	11	10	33	1.74
709546--709625	42	1.9	42	89	0	124	42	12	8	36	1.74
709649--709722	21	3.6	20	83	7	78	32	14	12	40	1.83
710408--710929	61	8.9	61	74	10	404	36	11	25	25	1.90
710406--710892	174	2.8	172	82	3	573	36	11	25	26	1.90
710609--710816	113	1.8	113	86	0	299	38	12	23	25	1.90
710643--711025	122	3.2	119	82	7	381	38	13	23	24	1.91
710759--710966	61	3.4	60	80	4	238	38	12	25	23	1.90
710730--711025	122	2.4	122	84	5	400	36	14	24	23	1.93
711066--711166	52	1.9	52	87	0	148	36	15	22	24	1.94
711234--711645	31	12.9	32	82	4	406	20	17	31	30	1.96
711646--711700	27	2.0	27	92	0	92	38	14	23	23	1.92
711694--711769	32	2.3	34	80	13	95	47	10	22	19	1.80
712826--712857	11	2.9	11	95	0	55	0	12	0	87	0.54
714922--715311	193	2.0	193	99	0	771	46	15	14	23	1.83
717488--717539	20	2.5	20	84	3	68	42	11	17	28	1.84
717585--717662	20	3.8	20	77	12	68	38	15	8	37	1.79
722255--722305	20	2.5	21	83	3	68	41	9	17	31	1.82
727156--727235	20	3.9	21	82	11	85	38	11	12	37	1.79
727156--727235	42	1.9	42	86	0	115	38	11	12	37	1.79
731038--731103	21	3.1	21	84	0	69	36	16	10	36	1.84
731064--731104	21	2.0	21	95	0	73	36	24	9	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
732304--732351	20	2.4	20	85	0	60	4	18	6	70	1.25
732304--732361	10	5.7	10	77	2	53	3	20	5	70	1.21
733223--733275	20	2.5	20	81	6	61	3	26	0	69	1.05
736948--737028	33	2.5	33	97	0	153	30	11	12	45	1.76
736962--737030	20	3.8	19	71	26	69	28	10	11	49	1.72
736982--737006	13	1.9	13	100	0	50	36	16	16	32	1.90
737071--737095	13	1.9	13	100	0	50	32	16	16	36	1.90
737104--737228	52	2.4	52	95	0	223	36	18	17	28	1.94
744102--744171	1	70.0	1	71	0	50	85	14	0	0	0.59
744105--744171	13	5.6	12	78	19	61	85	14	0	0	0.61
744102--744171	17	4.2	17	81	5	90	85	14	0	0	0.59
744103--744171	30	2.3	30	90	7	113	85	14	0	0	0.60
744103--744167	9	6.6	10	78	19	66	84	15	0	0	0.62
744104--744170	29	2.3	30	94	2	118	85	14	0	0	0.61
744119--744170	11	4.9	11	77	17	65	84	15	0	0	0.62
744106--744171	12	5.8	12	75	21	61	84	15	0	0	0.61
744408--744460	1	53.0	1	80	0	61	90	5	3	0	0.54
744407--744460	16	3.5	15	87	12	74	88	7	3	0	0.61
744410--744459	21	2.4	21	96	0	91	90	6	4	0	0.57
745374--745562	32	6.0	32	87	8	230	24	32	15	26	1.96
745374--745562	62	3.0	63	89	4	285	24	32	15	26	1.96
745542--746321	33	23.3	34	78	12	709	20	34	12	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
745378--746320	68	14.2	67	85	8	860	20	34	12	32	1.91
746152--746300	27	5.1	27	78	15	145	22	37	13	26	1.91
746152--746349	61	3.2	61	80	10	217	22	37	13	26	1.92
746342--747000	49	13.9	49	82	10	712	25	25	17	31	1.97
746337--746894	92	6.1	92	90	3	840	24	25	18	31	1.98
746783--746850	21	3.2	21	64	25	52	27	27	16	27	1.97
746762--746872	22	5.1	21	63	27	54	27	25	18	29	1.98
746848--747001	52	2.9	53	81	4	193	24	24	15	35	1.94
747811--747910	33	3.0	33	91	0	155	33	11	13	43	1.78
747844--747912	20	3.8	19	71	26	69	28	10	11	49	1.72
747864--747888	13	1.9	13	100	0	50	36	16	16	32	1.90
747953--747977	13	1.9	13	100	0	50	32	16	16	36	1.90
747986--748110	52	2.4	52	95	0	223	36	18	17	28	1.94
751276--751842	27	20.6	27	81	4	506	24	32	14	29	1.94
751279--751801	82	6.4	82	85	3	622	24	32	14	29	1.94
751279--751857	137	4.2	137	82	1	642	24	32	14	29	1.94
751279--752908	28	56.8	28	80	8	929	28	30	16	24	1.97
753682--753757	20	3.8	20	82	0	98	35	14	11	38	1.83
755964--756203	97	2.5	97	89	0	363	27	30	12	29	1.93
757510--757559	26	2.0	26	84	7	68	54	2	2	42	1.23
763134--763167	15	2.3	15	90	10	52	55	8	0	35	1.31
766537--766576	20	2.0	20	100	0	80	20	25	15	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768230--768255	11	2.4	11	100	0	52	34	0	0	65	0.93
769643--769678	16	2.1	18	90	10	58	61	0	0	38	0.96
769876--769942	19	3.4	19	72	14	55	61	1	1	35	1.15
772687--772717	16	1.9	16	93	0	53	16	6	0	77	0.97
772837--772861	2	12.5	2	100	0	50	48	0	0	52	1.00
773167--773369	105	2.0	103	91	3	327	45	4	5	44	1.48
774784--774809	4	6.5	4	100	0	52	23	0	0	76	0.78
775917--775976	21	2.9	20	82	7	66	38	1	1	58	1.18
777204--777228	3	8.3	3	100	0	50	0	32	0	68	0.90
782510--782569	12	5.5	11	73	13	52	70	3	1	25	1.12
782510--782569	22	2.7	23	82	5	70	70	3	1	25	1.12
782520--782570	23	2.4	20	78	15	57	70	1	1	25	1.08
790352--790384	2	16.5	2	93	0	57	54	0	45	0	0.99
790959--791012	12	4.8	12	80	8	53	35	0	0	64	0.94
790950--791026	32	2.5	31	78	17	88	40	0	0	59	0.97
790966--791051	24	3.3	26	74	11	72	43	0	0	56	0.99
791675--791736	29	2.1	31	90	6	101	40	0	0	59	0.97
791675--791723	14	3.4	14	77	5	62	34	0	0	65	0.93
791677--791726	15	3.4	15	72	5	57	36	0	0	64	0.94
792442--792481	16	2.5	16	88	8	55	45	0	0	55	0.99
794144--794218	6	12.2	6	71	23	50	50	2	0	46	1.15
794144--794217	21	3.6	21	76	9	80	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794181--794224	15	3.1	15	78	21	58	47	6	0	45	1.29
794296--794375	34	2.4	34	80	4	90	26	11	22	40	1.87
794879--794932	19	2.8	18	78	15	56	38	1	0	59	1.08
794952--794992	17	2.3	18	76	16	50	39	0	7	53	1.29
795989--796043	22	2.5	23	77	16	64	50	0	0	49	1.00
796000--796042	20	2.2	20	87	8	61	48	0	0	51	1.00
797761--797808	19	2.5	20	78	15	57	50	0	2	47	1.12
800730--800766	2	18.5	2	100	0	74	48	0	0	51	1.00
800784--800815	12	2.6	12	95	5	55	18	3	0	78	0.89
804684--804733	15	3.1	17	71	23	54	44	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29