genome.fa.s11.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold11
Parameters: 2 7 7 80 10 50 1000
Length:  5230303

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   

This is table  7  of  29  ( 3461 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
947753--947808	18	3.1	18	92	0	85	32	0	8	58	1.29
947753--947804	6	8.7	6	97	0	77	32	0	9	57	1.31
949294--949334	18	2.3	18	87	4	57	51	0	2	46	1.14
949963--949998	7	5.6	7	81	18	51	38	0	0	61	0.96
949963--949999	18	2.1	18	89	0	56	40	0	0	59	0.97
950063--950119	23	2.4	24	76	8	62	42	0	0	57	0.98
950074--950120	14	3.1	15	84	9	60	42	0	0	57	0.98
950074--950122	15	3.2	16	80	11	57	42	0	0	57	0.99
950320--950390	30	2.3	30	78	7	81	46	1	2	49	1.25
950554--950599	24	2.0	24	86	4	67	54	2	0	43	1.12
951271--951310	15	2.7	15	80	0	53	65	0	0	35	0.93
951820--951862	20	2.2	19	84	12	52	39	0	0	60	0.97
952982--953036	28	2.0	28	82	7	67	36	0	0	63	0.95
952991--953044	27	2.0	27	82	10	67	27	0	1	70	0.98
953416--953467	9	5.0	11	72	27	51	69	1	0	28	0.99
956560--956589	2	15.0	2	100	0	60	50	0	0	50	1.00
958620--958648	15	2.0	15	93	6	51	34	0	0	65	0.93
958585--958648	17	3.8	17	74	13	53	32	3	0	64	1.10
964834--964872	20	2.0	20	85	10	53	43	0	0	56	0.99
965337--965385	14	3.4	14	77	11	55	32	2	2	63	1.17
968731--968767	17	2.2	16	90	4	56	59	0	0	40	0.97
968745--968832	43	2.0	43	80	8	99	47	7	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
969444--969479	16	2.2	16	90	0	54	52	0	8	38	1.32
969603--969629	14	1.9	14	100	0	54	62	0	0	37	0.95
969618--969689	25	3.0	23	82	10	72	47	0	2	50	1.15
971928--971974	19	2.4	19	82	7	58	65	0	4	29	1.11
972014--972054	20	2.0	20	86	9	57	43	2	0	53	1.13
974020--974061	22	1.9	22	90	9	68	30	0	4	64	1.14
974763--974787	12	2.1	12	100	0	50	0	8	0	92	0.40
974761--974790	14	2.1	14	93	0	51	0	10	0	90	0.47
977780--977847	14	5.0	14	67	18	54	30	0	1	67	0.99
977805--977845	15	2.9	14	89	10	57	24	0	0	75	0.80
977852--977904	16	3.2	16	72	15	54	32	7	0	60	1.25
977852--977913	16	3.8	16	72	4	52	32	6	1	59	1.32
978232--978260	15	2.0	15	93	6	51	34	3	0	62	1.12
980674--980734	21	2.8	22	69	20	56	47	6	0	45	1.28
982425--982495	23	3.0	23	78	17	65	64	11	2	21	1.38
982954--983022	33	2.1	34	81	13	81	59	1	2	36	1.21
982963--983014	22	2.3	23	90	3	79	63	1	1	32	1.16
983041--983110	17	4.2	16	75	23	56	58	1	1	38	1.16
983108--983157	21	2.4	21	89	0	73	64	0	2	34	1.05
983089--983148	11	5.6	11	76	7	61	66	0	0	33	0.92
983270--983299	10	3.1	10	95	4	53	0	0	6	93	0.35
983874--983911	13	2.9	14	80	11	53	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983876--983915	19	2.1	19	90	0	62	32	0	0	67	0.91
984933--984987	24	2.3	24	87	6	76	40	1	0	58	1.09
985417--985451	11	3.3	11	92	8	63	42	11	8	37	1.72
985416--985448	10	3.2	10	91	8	57	42	9	9	39	1.68
986120--986168	19	2.5	20	86	6	73	53	2	0	44	1.12
996857--997173	156	2.0	156	97	0	598	23	23	19	34	1.96
1001354--1001429	33	2.3	32	79	20	86	56	2	1	39	1.21
1001377--1001431	17	3.4	17	72	22	55	56	1	1	40	1.21
1002106--1002157	16	3.1	16	75	17	52	55	0	1	42	1.10
1002319--1002373	21	2.6	21	86	8	85	65	0	0	34	0.93
1002319--1002376	15	4.1	16	73	22	58	65	0	0	34	0.93
1002312--1002361	27	1.9	27	84	8	68	62	2	0	36	1.07
1003135--1003175	18	2.2	19	86	4	57	48	0	0	51	1.00
1003296--1003331	17	2.1	18	89	5	56	50	0	2	47	1.15
1003615--1003662	18	3.0	16	77	19	55	45	0	0	54	0.99
1003746--1003791	21	2.1	22	84	11	60	52	0	0	47	1.00
1003770--1003894	48	2.5	49	81	6	126	44	2	1	51	1.24
1003976--1004015	20	2.0	21	85	5	55	40	10	0	50	1.36
1003986--1004030	22	2.0	22	82	0	54	33	4	4	57	1.38
1004630--1004674	16	2.7	17	81	18	51	62	0	0	37	0.96
1004647--1004710	26	2.3	28	82	15	71	60	0	3	35	1.12
1005137--1005220	36	2.3	38	83	8	111	59	2	0	38	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1006089--1006141	20	2.6	19	77	11	61	47	0	0	52	1.00
1006542--1006594	23	2.3	24	81	12	67	66	0	0	33	0.92
1006584--1006617	15	2.3	15	94	0	59	50	0	0	50	1.00
1006761--1006789	11	2.5	12	88	11	51	41	0	0	58	0.98
1006746--1006831	36	2.4	36	78	9	95	51	1	0	47	1.08
1007063--1007116	21	2.6	21	85	5	65	53	0	0	46	1.00
1007335--1007386	21	2.6	19	77	14	52	44	0	0	55	0.99
1008214--1008240	2	13.5	2	100	0	54	48	0	0	51	1.00
1011307--1011347	18	2.3	18	84	16	50	39	0	0	60	0.96
1011730--1011781	18	3.0	17	76	13	52	59	0	1	38	1.08
1012024--1012078	21	2.6	21	79	0	65	40	12	0	47	1.42
1018997--1019033	17	2.2	17	90	0	56	45	0	5	48	1.25
1021428--1021468	2	20.5	2	100	0	82	51	0	0	48	1.00
1022786--1022819	15	2.3	15	94	0	59	47	8	14	29	1.75
1034073--1034114	15	2.9	14	83	16	50	26	0	0	73	0.83
1034023--1034150	54	2.3	55	79	15	133	35	0	0	63	1.06
1034023--1034150	56	2.3	55	79	15	133	35	0	0	63	1.06
1034099--1034169	28	2.6	26	75	18	72	35	0	1	63	1.03
1035790--1035859	25	2.7	26	76	13	72	38	0	0	61	0.96
1035812--1035861	24	2.1	23	85	3	64	34	0	0	66	0.92
1035795--1035861	24	2.9	23	77	16	59	37	0	0	62	0.95
1035816--1035868	19	2.7	19	80	11	54	39	1	0	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1036086--1036122	12	2.9	13	88	8	58	21	0	0	78	0.75
1038020--1038107	32	2.8	32	76	10	83	46	7	13	31	1.72
1038231--1038321	15	5.5	15	73	19	67	47	1	5	46	1.33
1038245--1038306	22	2.7	22	82	9	63	45	1	8	45	1.42
1039098--1039148	22	2.3	22	80	12	61	33	1	0	64	1.05
1040925--1040951	2	13.5	2	100	0	54	0	48	0	51	1.00
1045198--1045226	6	4.8	6	100	0	58	34	0	17	48	1.47
1045170--1045267	18	5.3	18	70	16	58	39	4	22	33	1.73
1045219--1045276	18	2.9	20	72	15	57	44	5	25	24	1.74
1046065--1046093	13	2.1	14	93	6	51	31	17	0	51	1.45
1046095--1046137	2	21.5	2	100	0	86	51	0	0	48	1.00
1046228--1046268	16	2.4	18	76	19	52	41	2	7	48	1.44
1046905--1046937	16	2.0	17	88	5	50	30	0	6	63	1.18
1047312--1047372	18	3.3	18	69	26	56	49	1	1	47	1.21
1052264--1052296	12	2.8	12	90	4	50	48	0	0	51	1.00
1053974--1054060	27	3.3	27	73	7	81	41	3	24	31	1.71
1055013--1055053	16	2.4	18	76	19	52	41	2	7	48	1.44
1060986--1061018	12	2.8	12	90	4	50	48	0	0	51	1.00
1062697--1062783	27	3.3	27	73	7	81	41	3	24	31	1.71
1063737--1063777	16	2.4	18	76	19	52	41	2	7	48	1.44
1064558--1064615	29	2.1	27	84	9	73	58	6	0	34	1.25
1064715--1064829	27	4.1	27	69	18	92	53	2	1	41	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1070063--1070132	29	2.4	28	75	11	70	44	1	2	51	1.25
1070161--1070268	49	2.1	50	83	6	128	44	4	1	49	1.34
1070805--1070839	11	3.1	11	91	4	52	45	0	2	51	1.16
1071129--1071178	19	2.6	18	87	12	64	18	6	0	76	0.99
1072147--1072194	21	2.3	20	80	16	53	6	2	14	77	1.06
1073975--1074127	79	1.9	80	80	6	177	39	7	20	32	1.80
1074169--1074548	79	4.8	78	79	5	370	35	12	24	27	1.91
1073960--1074343	211	1.8	210	80	6	463	38	10	21	28	1.87
1074202--1074549	158	2.2	158	83	3	432	35	12	24	27	1.92
1076983--1077060	20	3.8	20	89	3	111	34	12	10	42	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29