Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold115
Parameters: 2 7 7 80 10 50 1000
Length:  1475684

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1122 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1446362--1446438
31
2.5
31
83
8
95
38
22
11
27
1.88
1446384--1446454
31
2.3
31
77
0
79
33
21
21
23
1.97
1450301--1450325
13
1.9
13
100
0
50
36
16
16
32
1.90
1450281--1450350
33
2.1
33
89
0
104
34
11
14
40
1.82
1450390--1450414
13
1.9
13
100
0
50
32
16
16
36
1.90
1450423--1450543
52
2.3
52
97
0
224
34
18
18
28
1.94
1454376--1454401
13
2.0
13
100
0
52
38
15
15
30
1.88
1454359--1454421
33
1.9
33
86
0
90
38
15
14
31
1.88
1455110--1456330
49
25.9
49
72
13
767
30
18
25
25
1.98
1455110--1456097
150
6.9
149
76
11
740
30
18
26
24
1.98
1455563--1456182
174
3.5
179
89
4
807
29
20
25
25
1.99
1455718--1456136
39
9.8
39
71
17
289
27
20
26
26
1.99
1455836--1456330
48
10.9
47
73
16
420
29
19
25
25
1.98
1455661--1456179
87
5.9
87
94
0
858
28
20
25
25
1.99
1456142--1456336
92
2.1
94
83
3
252
31
17
25
25
1.97
1456327--1456480
34
4.8
33
82
12
194
35
13
32
18
1.90
1456393--1456452
27
2.2
27
90
0
93
31
13
35
20
1.91
1456360--1456933
31
18.1
31
80
8
561
32
14
30
21
1.94
1456358--1456938
95
6.1
95
84
6
671
33
14
30
21
1.93
1456360--1456933
64
9.1
62
81
7
561
32
14
30
21
1.94
1458140--1458172
15
2.2
15
89
10
50
0
0
12
87
0.53
1458141--1458186
21
2.2
21
84
0
56
2
2
15
80
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1466101--1466135
17
2.0
18
94
5
63
45
8
5
40
1.58
1466185--1466221
11
3.4
11
84
0
56
37
0
0
62
0.96
1465803--1466422
314
2.0
315
92
1
1039
36
8
7
47
1.62
1467228--1468141
86
10.4
89
81
8
810
33
15
7
43
1.75
1467453--1467665
77
2.6
78
89
7
311
25
17
8
48
1.75
1467223--1468141
180
5.2
179
75
12
811
33
15
7
43
1.75
1468724--1469074
121
2.9
118
84
9
437
52
1
2
43
1.23
1469322--1469405
22
3.8
22
77
12
82
33
1
3
61
1.20
1469311--1469404
45
2.1
45
80
9
102
34
1
4
60
1.23
1469391--1469457
32
2.2
32
83
5
84
46
1
1
50
1.19
1469346--1469609
108
2.5
104
80
12
302
42
1
1
54
1.20
1469589--1469658
31
2.3
31
80
9
81
51
1
1
45
1.18
1469699--1469730
16
2.1
16
94
5
57
25
3
12
59
1.48
1469730--1469784
28
1.9
29
85
3
76
49
3
0
47
1.19
1470002--1470034
7
4.7
7
92
0
57
51
0
0
48
1.00
1470082--1470186
33
3.3
31
80
12
108
42
3
0
53
1.19
1470343--1470420
21
3.5
22
73
13
61
39
1
3
55
1.26
1470345--1470411
21
2.9
23
78
8
66
38
1
4
55
1.29
1475078--1475121
4
11.0
4
85
0
61
52
20
0
27
1.47
1475078--1475121
16
2.8
16
96
0
79
52
20
0
27
1.47

Tables:   1   2   3   4   5   6   7   8   9   10

The End!