genome.fa.s115.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold115
Parameters: 2 7 7 80 10 50 1000
Length:  1475684

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  7  of  10  ( 1122 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968367--968403	11	3.4	11	84	0	56	29	16	13	40	1.86
968361--968403	22	2.0	22	90	0	68	32	18	11	37	1.87
970749--970777	11	2.5	12	88	11	51	17	13	0	68	1.20
973189--973332	67	2.2	66	85	7	188	53	12	9	25	1.67
973998--974069	15	5.0	14	75	21	60	58	1	0	40	1.07
973985--974044	30	2.0	30	83	3	77	50	0	1	48	1.11
975211--975254	22	2.1	19	80	19	52	31	0	0	68	0.90
975821--975894	32	2.2	32	83	9	87	52	1	5	40	1.33
975914--975981	35	2.0	34	82	8	84	58	10	0	30	1.31
976285--976360	38	2.0	38	100	0	152	28	7	21	42	1.81
978439--978498	23	2.5	24	84	10	88	33	5	0	61	1.17
985657--985709	21	2.5	21	93	0	88	50	3	11	33	1.56
989029--989054	13	2.0	13	100	0	52	30	15	15	38	1.88
991121--991163	20	2.1	20	86	4	59	9	30	44	16	1.79
991605--991643	13	3.0	13	96	0	69	35	15	17	30	1.91
993723--993753	15	2.1	15	93	0	53	12	22	16	48	1.80
1000306--1000338	15	2.2	15	94	0	57	30	27	0	42	1.56
1001932--1001996	33	2.0	33	87	0	94	32	15	13	38	1.87
1001952--1001976	13	1.9	13	100	0	50	32	16	16	36	1.90
1002027--1002081	19	2.8	19	88	2	74	36	10	18	34	1.86
1002066--1002091	13	2.0	13	100	0	52	38	15	15	30	1.88
1004420--1004474	21	2.5	22	76	8	58	49	5	0	45	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013338--1013379	3	14.0	3	100	0	84	66	0	0	33	0.92
1014038--1014090	21	2.5	21	74	17	56	35	24	1	37	1.67
1016305--1016355	25	2.0	25	100	0	102	27	7	31	33	1.85
1017199--1017237	19	2.1	19	100	0	78	35	12	20	30	1.90
1021698--1021725	13	2.2	13	100	0	56	21	14	7	57	1.61
1024133--1024171	20	2.0	20	85	10	53	46	0	0	53	1.00
1026183--1026242	30	2.0	30	100	0	120	40	16	16	26	1.90
1026646--1026681	18	2.0	18	94	0	63	47	11	19	22	1.80
1027493--1027520	3	9.3	3	100	0	56	35	0	0	64	0.94
1027974--1028012	14	2.6	16	84	12	55	76	0	7	15	0.99
1029149--1029193	23	1.9	23	82	13	56	37	20	11	31	1.87
1030545--1030601	19	2.9	19	86	5	69	36	15	15	31	1.90
1030567--1030629	32	1.9	33	90	3	101	41	14	17	26	1.88
1031151--1031221	17	4.1	17	70	8	54	32	29	1	36	1.66
1033093--1033119	13	2.1	13	100	0	54	29	14	14	40	1.86
1033074--1033138	32	2.0	32	90	3	103	26	16	16	40	1.90
1033104--1033160	19	2.9	19	89	5	78	29	17	17	35	1.93
1038673--1038701	13	2.2	13	100	0	58	27	13	17	41	1.87
1041181--1041206	13	2.0	13	100	0	52	30	15	15	38	1.88
1041277--1041329	20	2.7	19	88	11	72	37	13	18	30	1.89
1047683--1047748	20	3.7	20	69	26	74	31	18	10	39	1.85
1047703--1047761	13	5.0	13	74	19	58	35	16	11	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1047683--1047782	33	3.0	33	92	2	166	33	18	11	38	1.85
1047811--1047867	19	2.9	19	84	5	69	35	17	14	33	1.90
1047852--1047878	13	2.1	13	100	0	54	40	14	14	29	1.86
1047836--1047897	33	1.9	32	90	3	97	40	17	16	25	1.90
1051131--1051202	28	2.6	28	86	0	108	23	18	31	26	1.97
1051160--1051500	161	2.1	160	81	6	404	29	11	28	31	1.91
1051160--1051813	80	8.2	80	74	9	446	31	11	27	30	1.91
1051359--1051787	237	1.8	237	83	6	584	33	10	26	29	1.90
1053615--1053967	136	2.5	140	77	12	352	36	13	20	28	1.91
1053597--1054072	70	6.7	69	74	12	301	37	13	21	27	1.90
1053615--1054025	137	3.0	135	76	11	377	36	13	21	29	1.91
1054133--1054239	45	2.4	44	81	9	119	42	13	25	18	1.86
1053982--1054297	120	2.7	115	81	9	340	37	12	25	24	1.91
1054152--1054238	45	1.9	45	90	4	140	43	13	25	17	1.85
1053952--1054431	116	4.0	116	76	13	331	40	12	23	23	1.89
1058508--1058550	12	3.8	12	84	9	54	76	2	20	0	0.89
1062425--1062619	99	2.0	99	91	2	320	30	16	24	28	1.97
1069535--1069584	20	2.5	20	90	0	73	50	12	12	26	1.74
1069673--1069733	20	3.0	20	85	4	68	34	14	9	40	1.79
1069693--1069742	20	2.5	20	87	9	66	34	14	8	44	1.74
1074047--1074106	28	2.1	28	81	6	68	18	21	31	28	1.97
1074059--1074425	81	4.5	81	77	5	332	28	10	30	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1074061--1074361	163	1.8	163	82	2	390	27	11	31	29	1.91
1076740--1076877	50	2.7	52	86	2	181	41	12	15	30	1.84
1077409--1077435	13	2.1	13	100	0	54	29	14	14	40	1.86
1077468--1077518	20	2.5	20	87	6	68	35	13	15	35	1.87
1079093--1079126	9	3.8	9	88	11	52	44	0	26	29	1.55
1086066--1086117	19	2.7	20	84	3	70	32	15	15	36	1.89
1086147--1086216	33	2.1	33	84	5	88	34	11	15	38	1.84
1089648--1089768	52	2.3	52	95	0	215	29	18	18	33	1.94
1089650--1089788	52	2.7	51	88	4	199	31	17	18	32	1.94
1089777--1089801	13	1.9	13	100	0	50	36	16	16	32	1.90
1089842--1089884	13	2.9	15	80	16	54	41	9	13	34	1.77
1096233--1096493	52	5.0	50	77	8	175	33	15	26	24	1.95
1096232--1096493	104	2.5	103	79	5	287	33	15	26	24	1.95
1096456--1096532	39	2.0	39	84	0	100	27	18	23	31	1.97
1096589--1096746	32	4.9	32	75	13	146	21	17	28	32	1.96
1096589--1096740	64	2.4	64	82	4	182	20	17	27	34	1.95
1096751--1096834	27	3.1	27	81	3	98	34	9	29	26	1.88
1096842--1096908	33	2.0	33	85	5	91	37	8	29	23	1.86
1096990--1097113	34	3.6	34	73	12	137	34	10	32	22	1.88
1096790--1097343	60	8.8	59	73	14	296	36	9	29	24	1.87
1096990--1098609	68	25.5	66	71	16	367	37	11	29	22	1.89
1097154--1097217	33	2.1	27	83	16	74	37	6	34	21	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1097039--1097221	96	1.9	98	85	4	255	34	7	32	24	1.84
1097220--1097277	27	2.1	27	90	0	89	36	13	25	24	1.92
1097247--1097442	34	6.0	34	70	14	135	39	11	28	20	1.87
1097282--1097338	26	2.2	26	87	0	78	36	12	28	22	1.90
1097188--1097362	60	2.9	59	77	9	174	38	11	28	22	1.88
1097487--1097604	61	1.9	61	83	8	150	34	11	28	25	1.90
1097579--1097676	26	3.7	26	86	2	133	29	12	31	26	1.92
1097579--1097663	26	3.2	26	88	1	134	28	11	34	25	1.91
1097646--1098607	34	29.9	33	66	19	247	37	11	28	22	1.88
1097883--1097943	27	2.3	27	88	0	86	37	13	29	19	1.90
1097850--1097965	61	1.9	60	91	1	187	39	11	28	20	1.87
1098040--1098159	60	2.0	60	88	0	177	37	12	27	22	1.90
1097910--1098447	220	2.5	217	88	2	799	37	11	29	22	1.88
1098456--1098569	60	1.9	60	85	5	158	32	14	29	22	1.94
1098286--1098629	94	3.6	94	76	12	267	35	12	30	22	1.91
1098578--1098629	26	2.0	26	96	0	95	26	11	32	28	1.91
1098623--1098705	34	2.5	33	80	17	102	36	13	31	19	1.90
1107853--1108478	79	7.9	79	79	9	453	34	12	24	28	1.92
1107858--1108478	158	3.9	156	79	8	593	34	12	24	28	1.92
1107911--1108459	237	2.3	234	79	10	575	34	12	24	28	1.92
1111553--1111806	43	5.9	42	79	6	251	46	12	21	20	1.83
1111540--1111740	85	2.4	85	81	6	237	48	12	19	19	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1111553--1111791	130	1.9	128	86	7	349	48	11	21	18	1.79
1111860--1112115	61	4.2	61	91	2	383	27	19	26	26	1.99
1111797--1112115	122	2.6	122	87	5	419	28	18	26	26	1.98
1112086--1112140	25	2.2	25	83	3	67	36	21	16	25	1.94
1112924--1112979	14	4.1	13	80	11	58	0	8	7	83	0.80
1123214--1123263	4	12.5	4	95	0	91	74	0	2	24	0.93
1125302--1126129	79	10.6	78	77	8	637	35	13	22	27	1.92
1125302--1126121	156	5.2	156	79	7	763	35	14	22	27	1.93
1125325--1126121	317	2.5	310	81	8	859	35	14	22	27	1.93
1126079--1126191	58	1.9	59	87	7	167	40	13	20	25	1.89

Tables:   1   2   3   4   5   6   7   8   9   10