genome.fa.s115.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold115
Parameters: 2 7 7 80 10 50 1000
Length:  1475684

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1122 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275973--277040	101	10.9	101	85	5	1081	32	18	25	23	1.97
276429--277040	92	6.5	92	86	6	666	32	18	25	23	1.97
277166--277435	34	8.0	34	78	9	259	35	11	31	21	1.89
277222--277556	31	10.5	31	75	14	247	31	13	31	22	1.93
277168--277371	97	2.1	101	88	3	308	35	11	31	21	1.89
277177--277425	134	1.9	132	88	3	383	34	12	31	21	1.90
277404--277551	30	4.9	30	84	11	187	26	17	31	24	1.97
277396--277551	61	2.6	61	90	6	237	26	16	31	25	1.97
285738--285866	52	2.5	52	97	0	249	27	18	18	34	1.95
285944--286027	13	5.5	13	71	28	60	35	17	13	33	1.89
285952--286014	19	3.7	18	76	24	73	36	17	12	33	1.88
285944--286029	32	2.7	32	96	0	163	37	17	12	32	1.88
286462--286515	20	2.7	20	83	13	67	79	0	18	1	0.82
286792--286876	43	2.0	43	97	0	161	29	8	21	41	1.82
295242--295292	16	3.4	15	77	15	52	50	0	0	49	1.00
296183--296216	16	2.1	17	88	5	52	79	2	0	17	0.86
296998--297028	5	6.4	5	92	7	55	38	0	0	61	0.96
298045--298490	51	8.7	51	83	6	526	54	4	2	38	1.36
298216--298322	49	2.3	43	74	19	108	57	5	3	33	1.40
298447--298531	42	2.0	44	90	4	138	56	3	0	40	1.16
298497--298530	10	3.5	10	84	8	52	58	0	0	41	0.98
298615--298673	22	2.7	21	84	7	73	45	10	8	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299071--299447	53	7.4	50	78	13	378	41	1	3	52	1.28
299228--299304	23	3.3	23	70	20	79	40	0	1	58	1.06
299076--299447	151	2.4	150	80	13	395	41	1	3	53	1.26
299753--299925	10	17.3	10	65	23	53	38	0	0	61	1.01
299846--299937	46	2.0	46	83	8	116	35	0	1	63	1.02
299853--299932	16	4.9	16	70	21	51	36	0	0	63	0.94
311593--311663	20	3.4	20	77	11	70	39	14	14	32	1.85
311590--311673	43	2.0	43	90	0	132	36	13	16	33	1.87
312193--312236	17	2.6	17	82	3	54	31	9	0	59	1.29
312868--313126	79	3.3	78	74	9	204	34	11	14	39	1.83
318150--318446	109	2.7	106	78	8	262	40	15	17	26	1.89
318222--318446	56	4.1	54	71	11	169	38	14	19	27	1.90
318799--318842	21	2.2	19	84	8	52	81	6	4	6	0.97
319926--319969	22	2.0	22	86	8	63	77	2	18	2	0.98
325012--325049	13	2.8	13	88	11	51	57	0	0	42	0.98
325016--325069	14	3.9	14	83	11	58	53	0	1	44	1.11
325023--325070	25	1.9	25	87	8	71	52	0	2	45	1.12
325178--325882	173	4.1	175	83	7	806	45	4	3	46	1.40
325178--325882	348	2.1	341	83	5	870	45	4	3	46	1.40
325989--326041	10	5.8	9	76	12	54	33	0	1	64	1.05
325991--326044	29	1.9	29	88	7	85	35	0	1	62	1.06
326466--326529	29	2.2	29	88	0	92	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330607--330644	12	3.2	12	82	17	53	68	0	0	31	0.90
331184--331208	2	12.5	2	100	0	50	52	0	0	48	1.00
333570--333619	22	2.3	21	77	19	50	44	2	2	52	1.24
334922--334972	24	2.1	24	85	7	68	27	0	1	70	0.98
337156--337203	18	2.5	19	83	10	53	35	4	4	56	1.38
338101--338143	14	3.2	14	78	21	56	60	0	0	39	0.97
338100--338136	19	2.0	19	89	5	58	62	0	0	37	0.96
339654--339687	17	2.0	17	88	0	50	41	0	0	58	0.98
341545--341579	2	17.5	2	93	0	61	0	51	0	48	1.00
341632--341670	14	2.6	15	88	8	53	43	0	0	56	0.99
348327--348390	21	3.2	20	77	18	62	50	0	1	48	1.10
348890--348925	16	2.3	16	90	4	56	50	13	5	30	1.65
350600--350626	13	2.1	13	100	0	54	40	14	14	29	1.86
353128--353455	79	4.2	78	80	3	363	27	22	12	36	1.91
353128--353419	156	1.9	156	84	2	390	27	23	12	36	1.91
353128--353493	79	4.7	79	79	3	335	27	22	12	36	1.91
353424--353544	51	2.4	50	81	2	125	28	22	11	38	1.89
360273--360647	112	3.4	112	78	5	303	32	14	13	38	1.86
361636--361734	51	1.9	51	89	0	153	18	16	17	48	1.81
362854--362939	41	2.1	41	82	8	104	19	18	11	50	1.77
363003--363076	30	2.3	32	78	15	82	18	20	12	48	1.80
368940--369204	147	1.8	148	83	4	358	43	13	10	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370859--371271	170	2.4	167	78	8	426	51	9	11	27	1.69
376679--376732	19	2.8	20	85	2	83	31	14	12	40	1.84
376777--376806	13	2.3	13	94	0	51	33	20	13	33	1.91
376761--376829	33	2.1	33	86	0	93	33	14	20	31	1.92
381726--382422	155	4.4	155	73	9	450	23	14	18	42	1.87
382051--382075	11	2.3	11	100	0	50	8	24	8	60	1.52
382172--382590	154	2.7	154	76	8	390	24	16	18	41	1.90
384994--385030	18	2.0	19	89	5	58	40	29	13	16	1.86
385095--385365	40	6.7	40	78	6	260	38	19	14	28	1.90
385103--385405	40	7.5	40	76	7	130	38	18	13	29	1.89
385090--385432	121	2.8	122	80	6	301	39	18	13	28	1.89
385429--385682	106	2.4	105	84	2	312	38	16	14	30	1.89
385429--385729	106	2.8	105	77	7	306	39	16	13	29	1.87
391625--391887	113	2.3	113	84	3	332	39	9	9	42	1.68
391797--391971	96	1.8	96	90	2	280	36	10	6	45	1.66
398565--398614	21	2.4	21	82	0	55	16	20	32	32	1.94
398858--399071	107	2.0	107	88	3	324	10	31	8	49	1.68
399394--399446	17	3.2	16	81	7	61	16	3	5	73	1.17
399408--399462	17	3.2	17	82	10	67	14	1	7	76	1.08
399384--399479	16	5.8	16	74	9	68	16	3	7	72	1.19
400379--400425	20	2.3	20	92	0	76	40	21	27	10	1.86
400388--400427	20	2.0	20	100	0	80	35	20	30	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403179--403242	25	2.4	27	79	10	78	67	12	12	7	1.42
404584--404651	32	2.1	32	86	0	91	20	25	11	42	1.86
404730--404780	16	3.2	16	85	0	66	21	33	13	31	1.92
405365--405849	36	13.8	36	74	9	162	35	18	10	35	1.86
405376--405849	107	4.5	106	77	5	433	35	19	10	34	1.86
405358--405688	143	2.3	143	80	2	351	35	17	10	37	1.84
405457--405830	143	2.7	140	81	5	407	34	19	11	34	1.88
405470--405859	36	11.1	33	73	10	176	34	19	11	33	1.88
405320--405827	72	7.2	69	74	7	310	34	18	10	35	1.86
405768--405873	34	3.1	34	78	7	92	34	22	11	31	1.90
406691--406872	96	1.9	96	85	2	249	33	10	11	43	1.76
411545--411819	137	2.0	137	94	0	487	57	6	5	30	1.49
413287--413317	2	15.5	2	93	0	53	45	0	3	51	1.17
415824--415848	2	12.5	2	100	0	50	52	0	0	48	1.00
416980--417068	18	4.9	18	70	21	60	58	0	1	40	1.05
417009--417076	29	2.3	30	80	9	79	58	0	2	38	1.13
417922--417976	15	3.7	15	77	0	56	65	1	3	29	1.20
427836--427890	28	1.9	29	85	3	76	36	1	7	54	1.39
427992--428033	13	3.0	14	86	10	59	28	2	0	69	1.01
427969--428030	13	4.8	13	73	13	56	27	1	1	69	1.07
427969--428091	17	6.8	17	65	26	58	33	1	1	63	1.14
433792--433836	14	3.4	14	79	17	60	22	0	4	73	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433789--433836	25	1.9	25	91	0	78	20	0	4	75	0.97
434348--434592	44	5.7	43	70	6	185	40	17	29	12	1.86
434349--434607	85	3.0	85	86	2	376	40	17	28	12	1.86
434653--435141	80	6.0	81	75	9	246	33	18	29	18	1.95
434733--435517	85	9.4	85	77	5	641	34	18	28	17	1.94
434733--435519	42	18.8	42	76	7	503	34	18	28	18	1.95
434614--435341	127	5.8	125	77	6	595	34	18	28	17	1.94
443432--443457	2	13.0	2	100	0	52	50	0	0	50	1.00
450412--450567	38	4.1	38	79	6	145	31	28	12	28	1.92
458475--458595	52	2.3	52	97	0	224	28	18	18	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10