genome.fa.s115.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold115
Parameters: 2 7 7 80 10 50 1000
Length:  1475684

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  9  of  10  ( 1122 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1293823--1293967	52	2.8	51	90	4	186	27	18	20	33	1.96
1293956--1293980	13	1.9	13	100	0	50	36	16	16	32	1.90
1294019--1294108	13	6.0	13	71	26	63	34	16	14	34	1.89
1294033--1294129	19	5.8	18	72	27	97	37	17	12	32	1.87
1294020--1294127	32	3.4	32	97	0	198	35	17	13	33	1.90
1294747--1295128	49	7.8	49	80	6	382	33	16	25	25	1.96
1294692--1295129	149	3.0	148	85	5	557	33	15	25	25	1.95
1294791--1295136	145	2.4	148	88	3	513	33	16	25	24	1.96
1294742--1295136	96	4.1	96	77	7	395	33	16	25	25	1.96
1295132--1295205	29	2.5	30	72	14	73	16	20	31	32	1.94
1295211--1295378	34	4.8	36	90	3	231	36	11	31	19	1.88
1295211--1295378	70	2.4	70	87	5	243	36	11	31	19	1.88
1295355--1295719	57	6.4	57	92	0	561	18	14	33	32	1.91
1297155--1297254	12	8.2	12	78	8	78	0	3	15	82	0.80
1297176--1297260	1	85.0	1	69	0	53	0	3	11	84	0.74
1314144--1314272	52	2.5	52	91	5	224	27	19	17	35	1.94
1314144--1314292	52	2.9	51	87	7	178	28	18	18	34	1.95
1314261--1314326	20	3.7	20	73	26	83	39	15	18	27	1.90
1314281--1314338	13	4.9	13	72	23	65	37	15	17	29	1.90
1314260--1314338	33	2.4	33	100	0	158	39	15	17	27	1.90
1314383--1314466	13	5.5	13	71	28	60	35	17	13	33	1.89
1314391--1314487	19	5.8	18	72	27	97	37	17	12	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1314261--1314485	32	7.0	32	81	8	192	34	16	16	32	1.91
1315960--1317142	55	20.9	55	86	7	1443	27	29	19	22	1.98
1316322--1316404	27	3.0	27	60	16	62	28	30	19	21	1.98
1315957--1317142	231	5.2	227	87	7	1576	27	29	19	22	1.98
1318072--1318126	19	2.9	19	97	0	101	34	10	14	40	1.81
1317878--1318107	123	1.9	123	99	0	451	36	15	15	32	1.88
1318166--1318191	13	2.0	13	100	0	52	30	15	15	38	1.88
1318146--1318212	33	2.0	33	88	0	98	25	14	16	43	1.86
1318581--1318710	65	2.0	65	100	0	260	21	23	20	35	1.96
1319630--1319706	28	2.8	28	87	0	100	23	33	19	23	1.97
1321890--1321966	20	3.8	20	71	6	66	23	12	16	46	1.82
1324453--1324521	28	2.5	27	88	9	95	26	30	17	26	1.97
1324555--1324629	28	2.7	28	79	8	82	22	29	21	26	1.99
1324403--1324678	107	2.6	107	80	4	342	28	25	14	32	1.94
1324617--1324733	51	2.3	51	85	11	168	30	24	9	35	1.87
1324667--1324896	79	2.9	79	82	1	264	28	24	12	34	1.91
1325850--1325919	20	3.5	19	84	9	86	41	11	18	28	1.85
1325957--1326144	52	3.7	48	84	8	207	28	14	14	41	1.86
1325977--1326144	52	3.3	51	86	2	221	28	15	14	41	1.86
1327769--1327819	21	2.4	21	96	0	93	25	11	7	54	1.63
1332852--1332976	20	5.7	20	73	18	106	44	12	13	30	1.80
1332852--1333026	91	1.9	91	92	1	298	44	10	14	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1336915--1336951	18	2.0	20	89	10	60	45	0	5	48	1.25
1340099--1340448	194	1.8	194	99	0	691	42	3	17	36	1.67
1341738--1341790	20	2.7	20	88	2	81	35	0	0	64	0.94
1341725--1341769	14	3.0	16	75	15	51	42	0	0	57	0.98
1342241--1342356	31	3.8	30	70	18	87	41	0	0	58	0.98
1342319--1342378	26	2.3	26	76	2	66	33	1	1	63	1.14
1342634--1342683	20	2.3	21	76	13	57	44	18	0	38	1.50
1344958--1345023	27	2.4	28	78	14	75	45	0	0	54	0.99
1344989--1345040	18	2.8	19	80	8	63	36	0	0	63	0.95
1345062--1345177	61	1.9	61	94	0	205	33	21	12	31	1.91
1345256--1345317	29	2.2	29	82	8	74	41	0	0	58	0.98
1345260--1345334	20	3.8	19	78	16	73	42	0	0	57	0.98
1345248--1345327	40	2.0	40	81	11	94	43	0	0	56	0.99
1345279--1345344	27	2.5	26	82	9	71	45	0	0	54	0.99
1348914--1348960	16	2.9	17	78	15	55	34	2	4	59	1.29
1349243--1349275	15	2.1	16	88	5	50	36	3	3	57	1.29
1350395--1350439	21	2.2	20	84	4	54	31	4	2	62	1.27
1350405--1350469	21	3.1	21	78	8	60	36	0	0	63	0.95
1350419--1350479	32	2.0	31	87	9	90	39	0	0	60	0.97
1350461--1350495	13	2.5	15	90	9	56	54	2	0	42	1.15
1350898--1350923	2	13.0	2	100	0	52	50	0	0	50	1.00
1356008--1356072	32	2.0	32	90	0	103	49	3	10	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1358841--1358883	16	2.6	16	79	17	52	53	0	0	46	1.00
1359620--1359680	24	2.4	24	83	8	77	55	14	1	27	1.49
1359772--1359812	13	3.1	14	76	16	52	41	4	4	48	1.46
1365760--1365791	15	2.1	15	94	0	55	65	0	3	31	1.08
1365964--1366217	134	1.9	133	89	5	397	33	12	14	39	1.83
1373791--1373865	20	3.8	20	74	0	78	33	12	13	41	1.81
1373791--1373868	40	2.0	39	84	2	102	33	11	14	41	1.81
1374775--1374826	23	2.3	23	96	3	97	19	11	9	59	1.59
1378820--1378844	11	2.3	11	100	0	50	32	16	16	36	1.90
1379530--1379559	14	2.2	13	94	5	51	73	0	3	23	0.98
1379533--1379566	17	1.9	18	94	5	61	73	0	5	20	1.04
1379665--1379704	2	20.0	2	100	0	80	50	0	0	50	1.00
1380409--1380454	20	2.3	20	85	14	69	28	0	0	71	0.86
1381787--1381837	15	3.3	15	78	13	59	62	0	3	33	1.13
1381934--1381982	22	2.2	22	85	7	64	36	0	0	63	0.95
1382235--1382297	25	2.5	26	77	15	69	57	1	3	38	1.24
1382409--1382446	16	2.2	17	86	9	51	52	0	0	47	1.00
1383146--1383244	41	2.4	39	74	15	92	60	1	3	35	1.19
1383161--1383244	41	2.1	41	82	6	100	61	0	3	34	1.13
1384316--1384350	16	2.1	17	94	5	63	57	5	5	31	1.46
1384467--1384532	16	4.1	16	92	0	105	59	0	0	40	0.98
1384467--1384532	32	2.1	32	97	0	123	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1384474--1384545	32	2.3	31	83	11	94	63	0	0	36	0.94
1386615--1386643	2	14.5	2	100	0	58	48	0	0	51	1.00
1390579--1390620	21	2.0	21	86	9	59	73	7	16	2	1.15
1391234--1391290	20	2.8	20	91	0	87	29	14	10	45	1.78
1395532--1395578	21	2.2	21	81	7	51	14	14	6	63	1.49
1399567--1404356	962	5.0	961	94	0	8032	34	19	21	25	1.96
1408649--1408695	20	2.3	20	92	0	76	31	19	6	42	1.76
1408710--1408762	20	2.7	20	93	0	88	35	13	7	43	1.72
1409621--1409661	21	2.0	22	85	9	59	21	19	9	48	1.77
1417138--1417188	20	2.5	20	87	6	68	35	17	15	31	1.92
1417260--1417285	13	2.0	13	100	0	52	38	15	15	30	1.88
1417242--1417306	32	2.0	34	90	6	107	41	15	13	29	1.86
1421353--1421383	15	2.1	15	93	0	53	48	16	22	12	1.80
1423464--1423501	13	2.9	13	96	0	67	34	18	15	31	1.92
1425894--1425944	20	2.5	20	87	6	68	35	17	15	31	1.92
1426016--1426041	13	2.0	13	100	0	52	38	15	15	30	1.88
1425998--1426062	32	2.0	32	87	6	94	41	16	13	27	1.87
1430053--1430102	23	2.2	23	82	7	57	58	0	0	42	0.98
1431629--1431662	2	17.0	2	93	0	59	52	0	0	47	1.00
1431753--1431806	3	18.0	3	77	7	56	0	35	3	61	1.14
1431759--1431805	12	3.9	12	88	5	69	0	38	4	57	1.18
1432774--1432826	24	2.2	24	90	6	81	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1432774--1432832	24	2.4	25	86	8	68	54	0	3	42	1.17
1433152--1433402	112	2.3	110	80	6	276	30	7	15	47	1.72
1435334--1435365	2	16.0	2	100	0	64	0	0	50	50	1.00
1438731--1438768	2	19.0	2	100	0	76	50	0	0	50	1.00
1439614--1439643	2	15.0	2	100	0	60	50	0	0	50	1.00
1440311--1440343	17	1.9	17	88	11	50	51	6	0	42	1.26
1440449--1440520	38	1.9	37	85	2	99	36	20	15	27	1.93
1440447--1440552	37	2.8	38	78	7	119	35	18	16	28	1.93
1441427--1441455	15	2.0	15	93	6	51	55	0	0	44	0.99
1446281--1446392	37	3.1	37	76	7	129	35	20	18	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10