genome.fa.s118.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold118
Parameters: 2 7 7 80 10 50 1000
Length:  1286304

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 935 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347473--347850	127	2.9	127	80	6	371	44	12	23	19	1.85
347418--347780	197	1.8	197	84	3	498	45	13	22	18	1.84
347600--347897	35	8.5	35	86	1	373	44	13	22	19	1.85
349347--349410	1	64.0	1	79	0	65	1	3	6	89	0.65
349354--349408	22	2.5	21	85	8	74	0	3	7	89	0.60
354602--355075	181	2.6	179	83	5	533	28	12	28	30	1.93
354602--355102	92	5.5	92	79	8	542	27	12	28	30	1.93
356689--356786	34	2.9	33	86	8	135	30	22	12	34	1.91
357212--357267	21	2.8	20	81	10	69	37	12	12	37	1.81
369045--369076	12	2.7	12	95	0	55	31	28	9	31	1.88
376787--376834	20	2.5	20	79	3	62	33	16	16	33	1.92
379403--379427	13	1.9	13	100	0	50	36	16	16	32	1.90
379416--379477	19	3.3	19	97	0	115	30	9	19	40	1.84
379535--379559	13	1.9	13	100	0	50	32	16	16	36	1.90
386295--386600	57	5.4	57	88	4	388	32	28	18	21	1.97
386289--386620	86	3.9	85	84	5	413	32	28	17	21	1.96
386290--386646	143	2.5	141	88	5	515	32	28	17	21	1.96
386668--387207	93	5.9	92	87	2	648	26	25	18	30	1.98
386663--387311	49	13.9	47	73	14	481	25	24	18	31	1.97
386997--387162	39	4.0	39	74	14	125	26	25	21	25	2.00
387123--387389	49	5.3	49	75	8	243	22	25	18	33	1.97
387123--387383	102	2.6	102	85	2	348	22	24	18	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388061--388117	13	3.9	13	76	24	60	35	14	15	35	1.88
388074--388136	19	3.6	19	76	24	84	33	12	15	38	1.86
388059--388144	32	2.7	32	100	0	172	32	12	16	38	1.86
388189--388213	13	1.9	13	100	0	50	32	16	16	36	1.90
391642--391751	31	3.5	31	70	11	73	14	23	29	32	1.94
391563--391901	180	1.9	180	84	0	462	18	20	26	34	1.96
391851--391901	16	3.2	16	71	15	52	11	15	35	37	1.84
392180--392386	90	2.3	90	84	3	256	28	15	24	30	1.96
392180--392412	90	2.6	88	81	5	254	29	14	26	30	1.95
395523--396841	61	21.8	60	79	7	1206	26	25	17	30	1.98
395524--396778	181	6.9	179	80	6	1279	26	25	18	30	1.98
395525--396841	242	5.4	239	81	6	1401	26	25	17	30	1.98
397354--397452	30	3.3	30	91	0	153	26	15	19	39	1.91
397407--397520	50	2.3	50	90	3	176	23	18	15	42	1.89
399887--400343	80	5.7	81	78	10	406	28	23	10	38	1.88
400266--400382	51	2.3	52	83	7	150	28	26	11	33	1.92
400188--400462	130	2.1	130	83	4	340	28	24	11	35	1.90
400319--400546	79	2.9	79	84	2	280	29	26	10	33	1.90
400110--400543	209	2.1	210	87	5	630	28	24	10	35	1.89
405846--406330	240	2.0	241	94	2	850	32	20	19	27	1.96
406842--406867	13	2.0	13	100	0	52	30	15	15	38	1.88
407437--407495	32	1.9	30	83	13	75	59	10	10	20	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407776--407801	13	2.0	13	100	0	52	30	15	15	38	1.88
410361--410396	13	2.8	13	100	0	72	41	16	13	27	1.87
412475--412505	15	2.1	15	93	0	53	12	22	16	48	1.80
414308--414352	21	2.1	21	84	8	56	22	20	4	53	1.63
416575--416600	13	2.0	13	100	0	52	30	15	15	38	1.88
417054--417151	20	4.7	20	85	9	133	37	13	19	29	1.90
417054--417151	43	2.3	41	89	6	144	37	13	19	29	1.90
417114--417213	51	1.9	52	91	2	166	43	11	20	26	1.84
417812--417851	21	1.9	21	84	0	53	22	20	12	45	1.84
425859--425926	33	2.1	33	86	5	93	36	16	13	33	1.87
428453--428479	13	2.1	13	100	0	54	40	14	14	29	1.86
437444--438101	309	2.1	312	79	6	692	25	14	19	40	1.89
443754--443791	20	1.9	20	88	0	58	44	10	10	34	1.73
450810--450835	13	2.0	13	100	0	52	30	15	15	38	1.88
451561--451858	49	6.0	49	84	5	345	32	16	26	24	1.96
451616--451858	98	2.5	98	93	4	418	31	16	26	25	1.96
451867--452103	28	8.3	29	78	8	220	19	17	29	33	1.95
451867--452103	57	4.2	58	79	7	229	19	17	29	33	1.95
451852--452103	85	2.9	88	81	6	277	19	18	28	32	1.96
452469--452553	37	2.3	37	93	0	143	44	15	12	27	1.83
453573--453625	11	4.9	11	82	13	65	3	1	9	84	0.81
453573--453629	16	3.5	16	83	11	80	3	1	10	84	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453573--453636	32	2.0	33	93	3	112	3	1	10	84	0.81
453592--453650	26	2.2	27	88	8	86	3	1	13	81	0.90
459539--459803	93	2.9	94	80	7	278	30	24	14	30	1.95
460008--460283	47	5.9	46	79	9	256	23	21	16	39	1.92
460352--460906	85	6.6	82	75	9	386	21	32	12	33	1.91
460523--460761	43	5.6	42	68	13	150	20	32	13	33	1.92
460352--461144	253	3.2	252	77	7	618	21	32	11	34	1.90
460352--461171	169	4.9	166	72	11	498	21	31	12	34	1.90
460782--460903	42	2.9	42	72	13	115	18	35	13	32	1.90
460766--461060	157	1.9	157	79	8	341	22	32	10	34	1.89
461006--461221	84	2.6	83	76	12	217	21	30	11	37	1.89
462436--463148	311	2.3	312	78	5	694	25	15	18	40	1.89
462350--463207	309	2.8	310	75	7	794	25	15	19	39	1.91
464702--464728	13	2.1	13	100	0	54	40	14	14	29	1.86
464683--464747	33	2.0	32	87	3	94	38	15	18	27	1.91
473459--473508	20	2.5	19	87	12	66	30	18	16	36	1.92
477419--477469	21	2.4	21	93	0	84	37	3	27	31	1.75
492291--492316	13	2.0	13	100	0	52	30	15	15	38	1.88
492271--492335	33	2.0	33	87	6	96	29	13	16	40	1.88
496973--497003	15	2.1	15	93	0	53	12	22	16	48	1.80
506022--506917	29	30.2	29	75	11	543	26	29	11	32	1.91
506022--506917	59	15.1	57	73	12	551	26	29	11	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506125--506382	61	4.4	58	78	9	209	27	32	10	28	1.90
506411--506561	61	2.4	61	78	8	180	25	27	12	34	1.92
506446--506760	28	11.0	28	75	11	199	25	29	13	30	1.94
506321--506830	27	17.0	33	71	15	146	25	28	12	33	1.92
506803--506882	30	2.7	29	80	3	88	30	31	10	28	1.89
506924--506978	28	2.0	27	93	6	94	27	23	10	38	1.88
506923--507033	31	3.7	31	77	13	108	25	29	11	33	1.91
507024--507626	33	18.6	33	77	7	382	31	28	15	24	1.96
507023--507634	64	9.5	66	75	6	398	31	28	15	24	1.96
507324--507627	127	2.4	126	79	7	296	32	29	16	21	1.95
508822--508848	13	2.1	13	100	0	54	29	14	14	40	1.86
508803--508867	32	2.0	32	90	3	103	30	15	15	38	1.88
508833--508889	19	2.9	19	90	10	89	33	17	15	33	1.92
508920--508982	33	1.9	32	87	12	92	36	17	15	30	1.91
509714--509750	19	1.9	19	94	0	65	32	16	21	29	1.95
509720--509759	19	2.1	19	90	0	62	35	17	17	30	1.93
517687--517713	13	2.1	13	100	0	54	29	14	14	40	1.86
517668--517732	32	2.0	32	90	3	103	30	15	15	38	1.88
517698--517773	19	3.9	19	87	3	116	32	15	15	35	1.90
517698--517773	39	2.0	38	89	2	116	32	15	15	35	1.90
518564--518617	20	2.7	20	82	2	72	42	11	14	31	1.81
522403--522441	21	2.0	20	85	14	55	46	15	5	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522411--522474	20	3.2	20	84	2	65	40	9	15	34	1.80
522437--522479	20	2.2	20	95	0	77	39	4	20	34	1.74
526458--526530	20	3.6	20	81	3	101	35	13	19	31	1.91
526476--526551	21	3.7	21	80	3	100	42	11	17	28	1.84
526458--526551	41	2.3	41	98	0	179	39	12	18	29	1.88
526590--526615	13	2.0	13	100	0	52	38	15	15	30	1.88
530679--530717	15	2.6	15	91	0	60	51	15	20	12	1.76
532723--532801	20	3.7	21	75	15	72	26	13	15	44	1.84
532788--532826	13	3.0	13	96	0	69	30	17	15	35	1.91
535279--535351	20	3.6	20	81	3	101	35	13	19	31	1.91

Tables:   1   2   3   4   5   6   7   8