genome.fa.s118.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold118
Parameters: 2 7 7 80 10 50 1000
Length:  1286304

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 935 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1177965--1178502	101	5.3	101	89	0	713	23	25	17	32	1.97
1177675--1178502	202	4.2	201	81	7	853	23	26	18	32	1.97
1179226--1179250	13	1.9	13	100	0	50	36	16	16	32	1.90
1179206--1179277	32	2.3	31	95	2	126	33	12	18	36	1.88
1179185--1179269	19	4.7	19	71	21	67	35	12	16	35	1.87
1179568--1179634	33	2.0	33	88	0	98	34	11	13	40	1.81
1179588--1179612	13	1.9	13	100	0	50	36	16	16	32	1.90
1179675--1179702	13	2.2	13	100	0	56	28	14	17	39	1.89
1179708--1179831	52	2.4	52	94	1	214	36	17	17	28	1.93
1182366--1182407	20	2.0	21	95	4	77	33	19	11	35	1.88
1184532--1184557	2	13.0	2	100	0	52	50	0	0	50	1.00
1185504--1185568	23	2.7	23	83	9	76	53	16	10	18	1.71
1187585--1187621	2	18.5	2	100	0	74	51	0	48	0	1.00
1187698--1187848	75	2.0	75	97	0	284	35	13	20	30	1.91
1190229--1190432	102	2.0	102	96	0	372	25	22	14	37	1.92
1190488--1190527	21	1.9	21	100	0	80	40	15	5	40	1.68
1198509--1198558	2	25.0	2	87	0	73	50	6	44	0	1.26
1199770--1199805	10	3.6	10	88	11	56	0	19	0	80	0.71
1199760--1199822	20	3.1	21	82	13	78	1	25	0	73	0.93
1199758--1199813	10	5.6	10	78	19	55	1	19	0	78	0.84
1200345--1200393	15	3.3	15	80	11	57	59	0	0	40	0.98
1201737--1201801	33	2.0	32	85	11	87	32	18	13	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1201829--1201881	20	2.7	20	88	2	72	26	15	15	43	1.85
1201831--1201913	19	4.6	19	77	18	88	30	14	15	39	1.87
1201852--1201928	32	2.4	32	100	0	154	35	12	15	36	1.86
1201871--1201926	13	3.8	13	75	24	58	35	10	16	37	1.83
1208971--1209010	3	13.3	3	89	0	62	30	37	0	32	1.58
1210609--1210633	13	1.9	13	100	0	50	32	16	16	36	1.90
1210589--1210653	33	2.0	33	88	11	98	30	18	15	35	1.92
1212308--1212912	154	4.0	152	76	7	510	33	9	8	49	1.64
1212370--1212922	305	1.8	306	82	4	722	33	9	7	49	1.64
1213122--1213151	2	15.0	2	92	0	51	53	0	0	46	1.00
1214292--1214496	79	2.6	78	81	6	218	28	17	30	24	1.97
1214450--1214524	28	2.7	28	82	0	78	24	18	33	24	1.97
1214507--1214686	52	3.4	52	79	6	211	32	11	26	30	1.92
1214601--1214729	51	2.5	52	86	3	163	34	14	24	26	1.94
1214713--1214786	27	2.7	27	85	2	85	22	18	33	24	1.97
1214771--1214893	51	2.4	51	81	8	142	32	12	23	31	1.91
1217165--1217190	13	2.0	13	100	0	52	38	15	15	30	1.88
1217144--1217210	34	2.0	33	91	2	107	44	13	16	25	1.84
1217242--1217293	19	2.7	19	93	0	95	40	17	11	30	1.85
1217329--1217426	21	4.7	20	93	5	135	36	19	12	31	1.89
1218577--1218908	157	2.1	158	83	3	402	28	10	16	44	1.81
1218577--1218953	157	2.4	155	81	7	384	28	10	18	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1223648--1223745	19	5.8	18	71	28	90	36	17	12	33	1.87
1223643--1223743	32	3.1	32	97	1	184	35	17	11	34	1.87
1223667--1223723	13	3.9	13	76	24	60	33	17	14	35	1.90
1228799--1228855	19	2.9	19	89	2	87	31	15	17	35	1.92
1228900--1228952	13	4.5	13	73	26	64	32	13	16	37	1.88
1228884--1228952	33	2.1	33	91	5	113	30	13	18	37	1.89
1237642--1237692	20	2.6	20	90	3	77	31	13	17	37	1.89
1239337--1239388	25	2.2	25	86	10	65	53	1	0	44	1.11
1240401--1240426	2	13.0	2	100	0	52	50	0	0	50	1.00
1240373--1240477	53	2.0	53	98	0	201	37	8	13	40	1.75
1242784--1242823	21	1.9	21	84	0	53	35	20	10	35	1.86
1243004--1243098	20	4.7	20	71	12	77	33	15	13	36	1.87
1242992--1243118	61	2.1	61	96	0	236	33	16	12	37	1.86
1243940--1243978	20	2.0	20	85	10	53	25	15	10	48	1.76
1247125--1247414	144	2.0	144	93	0	490	24	19	18	37	1.94
1258842--1258897	20	2.8	20	83	2	67	39	19	14	26	1.90
1262335--1262458	52	2.4	51	93	4	205	29	17	18	34	1.94
1262335--1262478	52	2.8	52	85	5	168	29	17	19	33	1.95
1262467--1262491	13	1.9	13	100	0	50	36	16	16	32	1.90
1262532--1262598	33	2.0	33	88	0	98	40	13	11	34	1.81
1262554--1262578	13	1.9	13	100	0	50	32	16	16	36	1.90
1262889--1262960	32	2.3	31	92	2	117	36	16	12	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1262916--1262940	13	1.9	13	100	0	50	32	16	16	36	1.90
1262968--1263276	160	1.9	160	92	2	514	30	18	14	35	1.91
1265586--1265698	51	2.2	51	83	0	145	33	16	7	41	1.78
1265631--1265916	79	3.6	78	87	2	385	30	17	12	40	1.86
1265631--1265955	158	2.1	152	84	5	402	30	18	13	37	1.89
1270164--1270288	20	6.7	20	76	20	144	26	16	19	37	1.93
1270151--1270340	72	2.6	72	96	0	344	27	16	18	37	1.92
1270256--1270371	52	2.2	52	90	0	187	27	16	18	37	1.93
1270256--1270391	52	2.6	52	87	2	166	29	16	19	35	1.93
1271912--1271984	20	3.7	19	87	7	85	38	17	15	28	1.90
1277435--1277545	30	3.7	30	89	6	163	27	27	18	27	1.98
1277435--1277616	31	5.9	31	80	11	171	26	29	14	29	1.95
1277549--1277713	35	4.9	34	86	6	219	21	33	11	32	1.89
1277716--1277849	33	4.1	33	93	0	214	29	30	17	22	1.97
1277697--1277831	66	2.1	66	83	2	166	30	34	16	19	1.94
1277944--1278486	43	12.1	43	83	9	654	25	24	18	31	1.97
1277893--1278502	92	6.7	92	91	3	955	26	24	17	31	1.97
1278057--1278124	21	3.2	20	66	25	50	27	26	16	29	1.97
1279542--1279929	52	7.4	51	71	13	279	31	12	26	29	1.92
1279747--1279819	27	2.7	26	87	10	94	21	19	35	23	1.96
1282286--1282311	13	2.0	13	100	0	52	38	15	15	30	1.88
1282351--1282418	19	3.9	18	76	23	83	38	14	11	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1282373--1282397	13	1.9	13	100	0	50	32	16	16	36	1.90
1282354--1282416	32	2.0	32	96	0	117	36	15	12	34	1.86
1282592--1283164	55	10.0	55	83	8	616	23	20	29	25	1.99
1282592--1283164	115	5.0	114	84	8	675	23	20	29	25	1.99
1282598--1283164	174	3.3	173	90	4	869	23	20	29	25	1.99
1284171--1284226	12	4.9	11	86	4	67	0	5	10	83	0.78
1284156--1284222	17	3.6	19	76	10	59	0	11	7	80	0.90

Tables:   1   2   3   4   5   6   7   8

The End!