genome.fa.s118.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold118
Parameters: 2 7 7 80 10 50 1000
Length:  1286304

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 935 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1011878--1012354	94	5.1	95	73	8	260	41	15	19	23	1.89
1014691--1014716	13	2.0	13	100	0	52	30	15	15	38	1.88
1014755--1014830	21	3.7	21	80	3	100	28	17	11	42	1.84
1014776--1014848	20	3.6	20	81	3	101	31	19	13	35	1.91
1014755--1014848	41	2.3	41	98	0	179	29	18	12	39	1.88
1017263--1017301	13	3.0	13	96	0	69	35	15	17	30	1.91
1017287--1017325	20	2.0	20	94	0	69	51	10	15	23	1.73
1019372--1019409	15	2.5	15	91	0	58	13	21	15	50	1.78
1023423--1023448	13	2.0	13	100	0	52	30	15	15	38	1.88
1023487--1023562	21	3.7	21	80	3	100	28	17	11	42	1.84
1023508--1023580	20	3.6	20	81	3	101	31	19	13	35	1.91
1023487--1023580	41	2.3	41	98	0	179	29	18	12	39	1.88
1024331--1024388	16	3.6	16	80	19	59	5	17	1	75	1.06
1024330--1024382	22	2.6	19	80	14	54	5	18	1	73	1.12
1030430--1030753	166	2.0	166	83	7	417	49	8	12	29	1.70
1032606--1032740	58	2.3	58	94	0	234	35	20	24	20	1.96
1033117--1033256	52	2.7	51	80	14	160	31	15	12	41	1.83
1033888--1033914	6	4.5	6	100	0	54	85	0	0	14	0.61
1033979--1034075	19	5.8	18	72	27	97	32	12	17	37	1.87
1033981--1034083	32	3.2	32	98	0	197	33	12	18	35	1.89
1034000--1034056	13	3.9	13	76	24	60	35	14	17	33	1.90
1034107--1034163	21	2.8	21	91	2	89	24	17	12	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1036493--1036626	51	2.6	51	76	7	135	29	24	11	34	1.90
1036687--1036862	52	3.4	53	77	8	171	31	26	10	32	1.89
1038466--1038504	21	1.9	21	94	5	71	20	23	12	43	1.86
1042125--1042174	19	2.5	20	90	3	75	28	16	18	38	1.91
1045073--1045099	13	2.1	13	100	0	54	29	14	14	40	1.86
1047094--1047446	186	1.9	186	100	0	706	49	11	12	27	1.75
1050899--1051073	87	2.0	87	96	0	323	40	13	19	27	1.88
1054049--1054099	23	2.2	23	82	3	57	50	25	13	9	1.72
1055466--1055672	106	2.0	106	88	0	306	25	13	22	38	1.91
1055878--1055950	20	3.7	20	79	3	76	31	15	13	39	1.86
1056544--1057315	61	12.3	61	75	8	570	33	17	23	26	1.96
1056546--1057036	191	2.6	184	78	10	490	33	16	23	26	1.96
1056701--1057314	125	4.9	122	76	11	477	33	17	22	26	1.96
1056429--1057315	65	14.0	65	73	12	551	34	17	22	26	1.96
1056524--1057315	126	6.3	125	74	9	555	34	17	22	25	1.96
1057756--1057798	19	2.3	19	95	0	77	27	6	18	46	1.75
1058569--1058599	13	2.4	13	100	0	62	38	12	16	32	1.86
1077679--1078296	78	7.9	78	77	12	413	35	11	22	30	1.89
1077829--1078194	79	4.7	75	79	9	263	34	12	23	29	1.92
1077679--1078273	157	3.8	153	76	11	414	34	11	23	30	1.90
1080735--1080789	19	2.8	19	80	2	65	32	14	10	41	1.81
1080836--1080882	20	2.3	20	82	7	60	31	19	10	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082957--1082983	13	2.1	13	100	0	54	40	14	14	29	1.86
1091628--1091692	33	2.0	33	85	11	89	33	18	13	33	1.90
1091721--1091771	19	2.6	20	87	3	68	33	17	15	33	1.92
1094848--1094914	33	2.0	33	88	0	98	34	11	13	40	1.81
1094868--1094892	13	1.9	13	100	0	50	36	16	16	32	1.90
1094991--1095111	52	2.3	52	97	0	224	34	18	18	28	1.94
1098327--1098369	21	2.0	21	100	0	86	27	23	20	27	1.99
1103338--1103419	30	2.7	31	90	1	121	25	28	18	28	1.98
1103396--1103600	35	5.7	35	88	5	311	21	33	11	33	1.90
1103396--1103602	73	2.8	73	96	0	389	21	33	11	33	1.90
1103583--1103619	19	1.9	19	100	0	74	21	48	16	13	1.80
1103548--1103716	54	3.0	54	72	20	148	20	37	13	28	1.90
1103602--1103858	33	7.7	33	79	13	251	18	35	12	33	1.89
1103860--1103999	34	4.5	31	88	7	180	29	38	17	14	1.89
1103992--1105168	49	23.7	49	89	2	1733	23	26	17	32	1.97
1103992--1105168	150	7.9	147	92	2	1733	23	26	17	32	1.97
1103992--1105234	199	6.2	197	89	3	1853	23	26	16	32	1.96
1103992--1105230	248	5.0	250	92	2	1985	23	26	17	32	1.96
1105082--1105476	171	2.3	171	93	1	682	24	24	14	36	1.93
1106275--1106341	33	2.0	33	88	0	98	34	11	13	40	1.81
1106295--1106319	13	1.9	13	100	0	50	36	16	16	32	1.90
1106385--1106409	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1106418--1106538	52	2.3	52	97	0	224	34	18	18	28	1.94
1112655--1112987	168	2.0	164	84	5	429	46	11	13	28	1.78
1112951--1113296	165	2.1	166	82	6	425	51	8	10	29	1.66
1115144--1115285	58	2.4	58	90	2	223	35	19	23	21	1.95
1118182--1118207	13	2.0	13	100	0	52	30	15	15	38	1.88
1120574--1120620	21	2.3	21	76	23	55	42	4	19	34	1.70
1120741--1120779	13	3.0	13	96	0	69	35	15	17	30	1.91
1120765--1120843	20	3.7	20	78	15	77	44	15	15	25	1.85
1122851--1122881	15	2.1	15	93	0	53	12	22	16	48	1.80
1124685--1124729	21	2.1	21	84	8	56	22	20	4	53	1.63
1125413--1125438	13	2.0	13	100	0	52	30	15	15	38	1.88
1127140--1127242	51	2.0	51	100	0	206	47	9	13	29	1.75
1128407--1128504	19	5.8	18	69	28	81	33	13	17	35	1.88
1128461--1128485	13	1.9	13	100	0	50	36	16	16	32	1.90
1128409--1128509	32	3.1	32	94	1	175	34	12	17	34	1.88
1128547--1128571	13	1.9	13	100	0	50	32	16	16	36	1.90
1128461--1128644	86	2.2	84	82	8	212	34	16	15	33	1.90
1128580--1128812	52	4.5	52	94	0	394	35	17	18	28	1.93
1135346--1135434	20	4.5	19	79	8	81	32	19	13	34	1.90
1140078--1140202	20	5.7	20	75	20	108	41	12	16	29	1.85
1141029--1141152	38	3.4	38	68	13	116	25	16	23	33	1.96
1141009--1141181	70	2.5	70	91	0	265	25	17	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1141141--1141222	32	2.6	32	84	3	105	23	18	30	28	1.97
1141195--1141764	28	19.8	28	81	6	584	24	17	28	28	1.98
1141174--1141764	57	10.2	57	81	7	629	24	17	28	28	1.97
1141122--1141764	85	7.4	85	82	6	682	25	17	28	28	1.98
1141557--1141681	65	1.9	65	93	0	214	26	16	30	26	1.97
1141497--1141733	122	1.9	121	88	3	350	24	18	29	27	1.98
1141472--1141764	150	2.0	150	86	4	412	25	18	29	27	1.98
1143006--1143076	1	71.0	1	72	0	52	5	2	5	85	0.80
1142993--1143074	25	3.0	27	74	16	80	7	2	7	82	0.91
1142996--1143074	18	4.4	18	76	10	81	6	2	7	83	0.89
1142982--1143075	9	10.1	9	72	21	61	7	4	6	81	0.96
1142995--1143076	10	7.6	10	73	17	58	6	2	7	84	0.86
1156720--1156757	20	1.9	20	94	0	67	39	13	15	31	1.86
1161678--1161702	13	1.9	13	100	0	50	36	16	16	32	1.90
1161660--1161729	32	2.3	29	90	7	104	32	12	18	35	1.89
1161751--1161818	20	3.8	20	71	28	80	35	17	11	35	1.87
1161772--1161831	12	5.2	12	74	25	67	33	16	15	35	1.90
1161752--1161848	32	3.1	32	91	5	153	32	17	13	36	1.89
1175744--1175847	12	8.1	13	77	14	83	83	12	3	0	0.77
1175746--1175845	30	3.5	28	81	10	105	84	12	4	0	0.76
1175749--1175847	27	3.8	26	83	14	116	83	12	4	0	0.77
1175746--1175835	1	90.0	1	70	0	63	85	10	4	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1177228--1177391	28	5.8	28	82	7	204	33	29	17	19	1.95
1177214--1177397	57	3.2	57	91	1	296	30	28	17	23	1.97
1177396--1177678	33	9.1	32	75	14	263	18	33	13	34	1.90
1177433--1177558	60	2.1	60	92	0	207	19	33	14	33	1.91
1177403--1177685	93	3.1	92	83	9	348	19	33	13	32	1.91
1177527--1177678	61	2.5	61	90	2	236	19	34	13	32	1.90
1177621--1177685	27	2.5	27	85	5	80	24	32	13	29	1.94
1177775--1178413	49	13.1	43	66	21	143	23	26	18	31	1.97
1177819--1178458	52	12.8	51	71	9	395	23	26	18	31	1.97
1177965--1178534	52	11.3	49	75	7	453	23	26	17	32	1.97

Tables:   1   2   3   4   5   6   7   8