genome.fa.s124.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold124
Parameters: 2 7 7 80 10 50 1000
Length:  1034113

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 840 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287910--289420	758	2.0	758	100	0	3022	31	20	14	33	1.92
293071--293095	9	2.8	9	100	0	50	92	8	0	0	0.40
294038--294104	33	2.0	33	88	0	98	34	11	13	40	1.81
294058--294082	13	1.9	13	100	0	50	36	16	16	32	1.90
294145--294169	13	1.9	13	100	0	50	32	16	16	36	1.90
294178--294305	52	2.5	52	94	3	224	33	17	17	30	1.94
296889--296944	22	2.5	23	97	2	105	62	8	10	17	1.52
297856--297930	20	3.8	19	77	7	69	40	12	13	34	1.81
301580--301711	38	3.4	38	73	14	108	15	25	15	43	1.87
301817--301924	38	2.8	36	82	12	119	23	26	12	37	1.91
307983--308076	14	6.7	15	70	26	71	50	0	1	48	1.07
307985--308033	16	3.0	17	76	11	57	48	0	0	51	1.00
308115--308152	1	38.0	1	100	0	76	100	0	0	0	0.00
313778--313802	13	1.9	13	100	0	50	32	16	16	36	1.90
315885--315915	15	2.1	15	93	0	53	12	22	16	48	1.80
319966--319991	13	2.0	13	100	0	52	30	15	15	38	1.88
322369--322422	20	2.6	21	85	2	65	40	7	16	35	1.77
322466--322545	42	1.9	42	84	0	106	35	13	12	38	1.83
327016--327068	26	2.0	26	100	0	106	18	15	15	50	1.77
330436--330489	20	2.6	21	91	2	83	44	11	12	31	1.78
330529--330566	20	1.9	20	94	0	67	44	7	18	28	1.78
332982--333099	50	2.3	51	85	1	157	28	23	10	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333037--333255	79	2.8	79	87	4	284	29	26	10	33	1.90
337765--337792	10	2.8	10	100	0	56	89	10	0	0	0.49
338960--339089	36	3.5	36	75	15	111	16	23	14	45	1.84
338961--339180	120	1.8	121	82	4	284	18	24	14	42	1.88
339081--339249	77	2.2	76	85	4	232	20	26	12	40	1.88
339203--339312	37	3.1	37	85	3	145	19	29	16	35	1.93
339441--339561	31	3.9	31	75	4	118	28	32	23	15	1.95
339341--339810	180	2.6	180	88	2	682	28	26	23	21	1.99
340463--340534	20	3.5	21	83	9	94	37	11	12	38	1.79
342703--342732	2	15.5	2	93	6	53	53	0	0	46	1.00
346526--346606	31	2.6	31	75	12	78	49	3	0	46	1.19
349157--349390	28	8.5	27	75	8	87	35	8	7	47	1.63
349268--349418	28	5.5	27	80	5	142	39	3	5	50	1.43
349240--349418	55	3.2	55	82	5	200	37	5	6	50	1.51
351642--352052	141	2.9	142	84	5	562	43	10	11	34	1.75
353602--353766	40	3.8	40	72	16	132	29	16	13	40	1.86
353611--353678	20	3.4	20	78	8	75	32	16	10	41	1.82
353693--353769	20	3.8	20	80	0	100	29	12	14	42	1.83
353591--353798	91	2.3	91	87	1	292	28	16	12	43	1.83
365501--365563	19	3.7	18	74	25	73	31	11	17	39	1.85
365503--365573	32	2.2	32	94	0	124	32	11	18	38	1.86
365522--365546	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365651--365776	52	2.4	52	93	0	225	36	18	18	26	1.94
371232--371339	1	108.0	1	73	0	72	85	12	1	0	0.69
371232--371339	15	7.3	14	76	17	94	85	12	1	0	0.69
371231--371339	45	2.4	44	85	10	141	84	12	2	0	0.73
372527--372694	20	7.8	20	69	13	120	30	15	13	40	1.86
372515--372722	91	2.3	91	88	0	326	29	16	12	40	1.86
374881--375102	70	3.2	70	95	1	401	27	26	8	36	1.86
376118--376235	52	2.3	52	83	1	166	30	15	12	41	1.84
378759--378962	79	2.6	78	82	6	234	31	15	27	25	1.95
378973--379369	52	7.6	51	72	9	280	32	11	26	29	1.91
378863--379358	263	1.9	263	93	0	866	31	12	27	28	1.93
381692--381741	21	2.4	21	90	6	75	26	24	10	40	1.86
382654--383283	55	11.0	55	77	9	478	27	21	25	25	2.00
382654--383281	117	5.5	116	80	7	644	27	21	25	25	2.00
383112--383731	217	2.9	217	92	3	990	27	21	26	24	1.99
383327--383498	55	3.0	55	83	11	220	26	21	26	25	1.99
383328--383525	62	3.3	61	86	6	275	26	21	26	25	2.00
383327--384014	272	2.5	272	90	2	1090	27	20	27	24	1.99
383545--383797	55	4.4	57	82	10	277	24	22	26	26	2.00
383118--384240	489	2.3	488	92	3	1858	28	20	27	23	1.99
383600--384230	217	2.9	217	93	0	1084	27	20	27	24	1.99
383816--383987	55	3.0	55	85	9	236	26	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383654--383951	155	1.9	159	86	7	428	27	20	27	24	1.99
383817--384013	62	3.3	61	87	6	273	26	19	27	25	1.99
384033--384204	55	3.0	56	85	9	247	25	21	27	25	1.99
383871--384169	155	1.9	159	86	4	435	27	20	28	23	1.99
384034--384240	62	3.5	61	87	7	286	26	20	28	25	1.99
385198--385254	11	5.0	11	80	6	51	0	12	5	82	0.82
397651--397830	78	2.3	79	84	4	222	30	16	27	25	1.97
397844--398064	52	4.3	51	83	3	255	33	11	25	29	1.91
397844--398064	103	2.1	104	84	4	277	33	11	25	29	1.91
398109--398241	52	2.6	51	83	3	158	32	11	24	31	1.91
397736--398230	264	1.9	262	94	0	873	31	13	26	28	1.93
400574--400599	13	2.0	13	100	0	52	38	15	15	30	1.88
400586--400627	21	2.0	21	95	0	75	28	21	9	40	1.84
400652--400705	21	2.7	20	77	8	65	38	14	12	33	1.85
403631--403710	32	2.5	32	95	0	151	41	15	16	27	1.88
403665--403835	52	3.3	52	77	3	177	45	13	12	29	1.80
403874--403945	21	3.5	21	78	3	92	37	20	8	33	1.83
403891--403971	20	4.0	20	77	3	90	33	20	8	37	1.84
403874--403966	41	2.3	41	96	0	168	35	20	8	35	1.83
406990--407026	19	1.9	19	88	0	56	54	0	2	43	1.14
407145--407728	167	3.5	164	78	7	525	49	8	11	30	1.69
407622--407687	21	3.5	19	80	10	64	63	7	6	22	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409481--409506	13	2.0	13	100	0	52	30	15	15	38	1.88
409545--409620	21	3.7	21	80	3	100	28	17	11	42	1.84
409566--409638	20	3.6	20	81	3	101	31	19	13	35	1.91
409545--409638	41	2.3	41	98	0	179	29	18	12	39	1.88
412085--412123	13	3.0	13	96	0	69	35	15	17	30	1.91
412109--412187	20	3.7	20	75	18	70	45	15	13	25	1.83
414202--414232	15	2.1	15	93	0	53	12	22	16	48	1.80
418294--418319	13	2.0	13	100	0	52	30	15	15	38	1.88
418358--418433	21	3.7	21	80	3	100	28	17	11	42	1.84
418379--418451	20	3.6	20	81	3	101	31	19	13	35	1.91
418358--418451	41	2.3	41	98	0	179	29	18	12	39	1.88
418865--419653	47	17.4	47	72	8	310	40	16	22	20	1.91
418838--419600	93	8.4	89	71	10	334	39	16	22	21	1.92
419014--419600	135	4.3	136	80	3	594	40	16	22	20	1.91
419014--419600	272	2.2	272	79	5	614	40	16	22	20	1.91
421352--421399	25	1.9	26	87	8	73	12	18	0	68	1.20
424300--424597	141	2.1	140	85	5	397	44	11	8	35	1.70
424300--424663	140	2.6	140	82	7	400	43	11	8	35	1.72
424677--424715	18	2.2	19	86	9	55	15	2	2	79	0.95
425547--425596	9	5.0	10	80	9	50	2	20	2	76	0.99
426155--426592	164	2.7	163	82	6	467	51	8	9	29	1.65
426093--426657	164	3.4	164	78	7	465	50	8	10	30	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427051--427079	11	2.6	11	100	0	58	58	17	0	24	1.38
427684--427868	84	2.2	84	78	4	194	47	12	22	17	1.82
427721--427956	127	1.9	128	85	2	332	44	12	23	19	1.85
427643--428334	43	16.3	42	66	13	163	43	12	23	20	1.86
427846--428350	85	6.0	83	81	4	539	43	12	23	20	1.86
428154--428290	41	3.3	41	73	12	125	48	12	21	16	1.79
428386--428523	41	3.4	41	75	6	136	44	15	21	17	1.86
428361--428523	81	2.0	81	85	0	218	43	15	23	17	1.87
428512--428633	46	2.7	46	83	1	129	43	12	23	20	1.86
430068--430101	15	2.3	15	90	5	52	20	2	11	64	1.39

Tables:   1   2   3   4   5   6   7