genome.fa.s124.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold124
Parameters: 2 7 7 80 10 50 1000
Length:  1034113

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 840 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567150--567377	57	3.9	57	77	7	201	25	16	28	28	1.97
567176--567382	88	2.4	86	85	4	272	24	16	27	31	1.97
567176--567386	117	1.8	116	83	4	280	25	16	27	31	1.97
568823--568920	1	98.0	1	73	0	79	0	0	13	86	0.56
568825--568918	11	8.9	10	87	6	116	0	0	13	86	0.58
568826--568920	21	4.7	20	85	12	124	0	0	13	86	0.58
575968--576024	21	2.7	21	91	0	96	31	10	19	38	1.86
576080--576147	19	3.9	19	78	21	85	35	11	14	38	1.83
576101--576125	13	1.9	13	100	0	50	36	16	16	32	1.90
576082--576144	32	2.0	32	96	0	117	34	12	15	36	1.86
576187--576212	13	2.0	13	100	0	52	30	15	15	38	1.88
576167--576233	33	2.0	33	88	0	98	25	14	16	43	1.86
578687--578759	27	2.7	27	87	6	94	23	34	21	20	1.97
578742--578912	51	3.3	51	79	4	198	29	26	11	32	1.92
578573--578912	105	3.2	105	69	12	273	30	26	11	31	1.92
578895--578976	28	2.9	28	80	7	87	25	31	15	26	1.96
588302--588450	52	2.9	51	87	4	217	31	17	17	33	1.93
588439--588463	13	1.9	13	100	0	50	36	16	16	32	1.90
588525--588549	13	1.9	13	100	0	50	32	16	16	36	1.90
590264--590341	20	3.7	20	74	15	75	29	15	14	41	1.86
590462--590507	21	2.2	20	81	11	58	32	19	4	43	1.71
594648--594840	97	2.0	97	85	4	264	35	12	23	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595821--596048	52	4.4	52	73	4	174	39	15	17	27	1.91
596252--596588	31	10.6	32	78	7	287	21	14	29	34	1.93
596252--596598	64	5.5	62	78	6	275	21	14	29	34	1.93
596285--596598	95	3.3	96	82	5	336	21	14	30	34	1.93
596581--597396	29	27.9	29	77	5	624	30	13	30	25	1.94
596581--597396	59	14.0	58	77	6	607	30	13	30	25	1.94
602149--602215	33	2.0	33	88	0	98	34	11	13	40	1.81
602169--602193	13	1.9	13	100	0	50	36	16	16	32	1.90
602256--602280	13	1.9	13	100	0	50	32	16	16	36	1.90
602289--602409	52	2.3	52	94	0	215	35	18	17	28	1.93
606506--606575	27	2.5	28	84	6	81	30	20	25	24	1.99
606452--606654	106	1.9	107	80	3	239	32	16	26	25	1.96
607882--608124	120	2.0	120	98	0	468	48	10	19	21	1.78
610194--610242	23	2.2	22	81	3	53	67	14	2	16	1.33
610510--610627	51	2.3	51	85	5	150	29	12	27	29	1.93
610611--610683	28	2.6	28	91	0	110	27	17	28	26	1.98
610545--610761	107	2.0	109	85	2	294	31	13	27	27	1.94
618170--618195	13	2.0	13	100	0	52	30	15	15	38	1.88
618151--618214	33	2.0	33	87	3	94	28	12	17	42	1.85
618245--618318	20	3.7	20	82	8	78	29	17	13	39	1.88
618841--618931	39	2.3	39	79	11	105	32	21	6	38	1.80
620282--620324	20	2.1	20	86	4	59	9	30	44	16	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620765--620880	13	8.9	13	89	0	178	36	14	18	31	1.91
620765--620880	26	4.5	26	95	0	214	36	14	18	31	1.91
622933--622973	15	2.7	15	84	3	55	17	19	17	46	1.85
624572--624597	13	2.0	13	100	0	52	38	15	15	30	1.88
624554--624617	32	2.0	33	90	3	103	39	18	14	28	1.90
628078--628127	19	2.6	19	100	0	100	28	12	16	44	1.83
628116--628141	13	2.0	13	100	0	52	30	15	15	38	1.88
628097--628160	33	2.0	33	90	3	103	28	14	17	40	1.88
628596--628621	12	2.2	12	100	0	52	34	19	15	30	1.93
636066--636100	18	1.9	18	94	0	61	31	28	0	40	1.57
637740--637794	19	2.8	20	86	5	76	38	18	14	29	1.90
638507--638575	34	2.0	34	97	0	129	31	14	13	40	1.84
640693--640743	25	2.0	25	96	0	93	41	13	19	25	1.88
640788--640830	21	2.2	19	84	16	52	30	11	20	37	1.89
641122--641403	45	6.3	45	75	8	227	18	22	17	42	1.89
642766--642822	21	2.8	20	82	15	80	78	0	19	1	0.83
642768--642822	11	5.6	9	76	19	56	80	0	18	1	0.81
642843--642901	29	2.1	28	81	9	66	16	13	8	61	1.56
643983--644197	109	2.0	109	91	0	349	27	16	13	42	1.86
643973--644217	51	4.6	51	81	7	256	28	16	13	42	1.85
644238--644371	45	3.0	45	96	0	241	29	22	9	38	1.86
648309--648356	21	2.3	20	82	6	60	72	2	0	25	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648305--648358	25	2.2	25	83	12	67	72	1	0	25	0.95
649254--649293	3	13.7	3	94	5	73	67	0	0	32	0.91
649356--649389	17	2.0	17	88	0	50	17	20	8	52	1.71
651869--651902	16	2.1	16	94	0	59	38	14	14	32	1.87
651952--652553	153	3.9	154	81	5	553	25	18	18	37	1.93
652259--652561	155	1.9	156	86	3	423	25	17	18	38	1.92
659113--659251	52	2.7	51	84	5	174	46	13	13	25	1.80
659113--659251	51	2.7	53	81	9	180	46	13	13	25	1.80
659308--659367	21	2.5	25	74	23	74	33	21	8	36	1.84
659323--659363	21	2.0	21	100	0	82	24	24	9	41	1.85
664712--664769	28	2.1	28	100	0	116	27	10	6	55	1.59
667039--667063	13	1.9	13	100	0	50	32	8	16	44	1.76
667049--667143	20	4.8	20	97	1	174	29	17	15	36	1.91
667184--667213	13	2.3	13	100	0	60	33	16	13	36	1.88
667268--667305	20	2.0	20	94	5	69	36	10	15	36	1.82
667489--667536	22	2.2	22	96	3	89	31	14	8	45	1.74
670001--670031	16	1.9	16	93	0	53	41	6	29	22	1.78
670740--670785	24	1.9	24	86	8	67	43	6	0	50	1.28
671351--671398	17	2.9	17	75	3	53	16	4	22	56	1.58
671356--671402	17	2.8	17	80	3	60	19	4	23	53	1.63
673964--673988	13	1.9	13	100	0	50	32	16	16	36	1.90
674024--674076	22	2.4	22	83	0	70	32	22	7	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674049--674186	73	1.9	73	89	0	213	31	26	10	31	1.91
676251--676302	21	2.4	21	78	15	61	57	1	23	17	1.49
680243--680308	27	2.4	27	87	0	87	24	16	33	25	1.96
683008--683064	22	2.6	22	94	0	96	26	24	12	36	1.91
683033--683170	73	1.9	73	92	0	231	30	24	11	33	1.91
687909--688761	157	5.5	156	81	7	777	37	21	17	22	1.94
690351--690395	21	2.3	20	85	11	58	6	13	26	53	1.64
690357--690401	21	2.2	20	88	4	63	6	11	28	53	1.61
690861--690916	18	3.1	18	77	12	60	3	26	0	69	1.04
691202--691240	17	2.4	17	87	12	55	69	5	5	20	1.28
691190--691254	19	3.6	18	73	23	64	64	4	4	26	1.32
691391--691786	164	2.4	164	80	5	415	49	8	11	30	1.69
695079--695279	52	3.9	52	90	1	305	26	15	30	27	1.96
699732--699767	18	2.0	18	88	0	54	16	11	22	50	1.77
701523--701563	15	2.7	15	96	3	73	58	4	0	36	1.20
701693--701736	2	21.5	2	90	4	70	50	2	2	45	1.27
705966--706001	18	2.0	18	88	0	54	30	8	16	44	1.77
711274--711305	2	16.0	2	100	0	64	50	0	50	0	1.00
711371--711402	2	16.0	2	100	0	64	50	0	0	50	1.00
711423--711459	2	18.5	2	100	0	74	48	0	51	0	1.00
712420--712460	18	2.4	18	92	8	68	56	0	0	43	0.99
715977--716027	20	2.5	20	80	0	57	27	13	13	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718370--718495	50	2.5	50	86	1	162	25	22	13	38	1.90
718535--718766	79	2.9	79	79	6	204	24	24	17	33	1.96
718723--718793	28	2.6	27	88	4	115	22	28	21	28	1.99
724296--724391	28	3.4	28	87	7	133	22	17	35	23	1.95
724415--724549	51	2.6	52	84	3	166	33	14	25	26	1.94
724482--724739	79	3.3	79	86	2	331	31	15	27	26	1.96
724692--724766	27	2.7	27	85	2	96	26	18	29	25	1.98
724754--724867	51	2.3	48	81	14	135	35	12	21	29	1.90
727211--727276	33	2.0	33	88	5	98	45	12	16	25	1.82
735492--735620	52	2.5	52	94	0	231	28	17	17	35	1.93

Tables:   1   2   3   4   5   6   7