genome.fa.s124.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold124
Parameters: 2 7 7 80 10 50 1000
Length:  1034113

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 840 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
895910--895935	13	2.0	13	100	0	52	30	15	15	38	1.88
895890--895957	33	2.1	32	91	2	109	35	19	13	32	1.90
901858--901888	8	3.8	8	95	4	53	12	0	25	61	1.32
902540--902580	20	2.0	21	85	9	57	17	43	34	4	1.70
903633--903706	37	2.0	37	94	0	130	29	27	18	24	1.98
903946--903989	21	2.0	22	86	4	63	38	0	29	31	1.58
904638--904689	20	2.7	20	84	3	70	40	21	9	28	1.84
908692--908717	13	2.0	13	100	0	52	30	15	15	38	1.88
911273--911310	13	2.9	13	96	0	67	31	15	18	34	1.92
915226--915270	21	2.1	21	84	8	56	22	20	4	53	1.63
917492--917517	13	2.0	13	100	0	52	30	15	15	38	1.88
917957--918009	23	2.3	23	83	6	63	18	3	9	67	1.33
918846--918897	17	3.1	16	81	10	50	40	0	0	59	0.97
924267--924313	2	24.0	2	79	12	53	46	0	46	6	1.28
924379--924433	7	8.0	7	85	4	58	78	1	20	0	0.85
924403--924442	20	2.0	21	95	5	73	80	2	15	2	0.93
927435--927497	31	2.0	31	93	0	108	12	20	26	39	1.89
928261--928316	16	3.5	16	85	0	76	57	1	3	37	1.27
928247--928291	23	2.0	23	86	4	65	62	0	2	35	1.08
929575--929603	10	3.0	10	95	5	51	48	0	0	51	1.00
929743--929785	22	2.0	22	86	9	61	67	4	2	25	1.22
929860--929890	2	15.5	2	93	0	53	51	3	0	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931297--931329	17	1.9	17	93	0	57	75	0	0	24	0.80
931444--931490	16	3.0	16	82	14	62	40	0	0	59	0.97
931449--931499	16	2.9	18	80	14	61	39	0	0	60	0.97
936935--936991	2	30.5	2	76	13	50	50	1	0	47	1.11
936921--936959	20	2.0	20	94	0	69	48	0	0	51	1.00
936925--936997	12	6.5	11	76	16	62	54	1	0	43	1.08
936925--936988	20	3.4	19	74	12	60	51	1	0	46	1.10
942577--943302	60	12.1	60	86	4	962	25	26	19	28	1.99
942577--943302	120	6.0	120	94	0	1193	25	26	19	28	1.99
944006--944069	19	3.7	19	76	23	86	32	12	18	35	1.89
944007--944077	32	2.2	32	100	0	142	32	12	19	35	1.90
944026--944050	13	1.9	13	100	0	50	36	16	16	32	1.90
944101--944167	33	2.0	33	88	0	98	31	16	16	35	1.91
944121--944146	13	2.0	13	100	0	52	30	15	15	38	1.88
944653--944835	51	3.6	51	83	5	217	29	26	12	32	1.92
944653--944835	52	3.6	52	84	4	219	29	26	12	32	1.92
944818--944893	28	2.8	28	86	6	93	23	35	18	22	1.96
944848--945051	79	2.6	78	82	3	248	25	30	15	28	1.96
949029--949054	13	2.0	13	100	0	52	30	15	15	38	1.88
949009--949072	32	2.0	33	93	3	112	28	12	15	43	1.83
949009--949072	19	3.6	19	72	25	68	28	12	15	43	1.83
949711--949787	39	2.0	38	85	10	102	29	22	7	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951159--951201	20	2.1	20	86	4	59	9	30	44	16	1.79
951633--951671	13	3.0	13	96	0	69	35	15	17	30	1.91
957830--957855	13	2.0	13	100	0	52	30	15	15	38	1.88
957810--957873	32	2.0	33	93	3	112	28	12	15	43	1.83
957810--957873	19	3.6	19	72	25	68	28	12	15	43	1.83
957967--958122	71	2.2	71	100	0	312	31	16	12	39	1.87
959840--959931	20	4.6	20	80	9	89	32	15	14	38	1.87
961432--961494	19	3.7	17	76	24	62	31	12	17	38	1.87
961451--961475	13	1.9	13	100	0	50	36	16	16	32	1.90
961430--961502	32	2.3	32	95	0	128	32	12	17	36	1.87
961538--961605	20	3.8	20	74	25	87	26	19	14	39	1.90
961526--961604	33	2.4	33	100	0	158	27	17	15	39	1.90
961526--961584	13	5.0	13	75	23	67	28	16	15	38	1.89
963936--964855	52	17.6	51	69	11	443	29	26	11	32	1.91
964110--964857	51	14.3	52	70	10	271	29	25	11	32	1.91
963947--964964	262	3.9	262	93	0	1761	29	26	11	32	1.92
964576--964652	28	2.8	28	87	0	100	23	33	19	23	1.97
964868--965072	79	2.6	79	82	4	270	26	29	15	28	1.96
964789--964988	107	1.9	107	82	5	251	28	28	14	28	1.95
966095--966147	20	2.6	20	84	3	70	30	16	13	39	1.87
968787--968832	21	2.2	20	82	14	58	21	17	19	41	1.90
974164--974242	16	4.9	16	81	6	88	39	32	16	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975283--975341	16	3.7	16	76	0	55	37	30	16	15	1.90
977419--977449	7	4.4	7	100	0	62	74	0	25	0	0.82
980975--981002	14	2.0	14	100	0	56	78	0	14	7	0.95
981353--981392	21	1.9	21	84	0	53	72	2	5	20	1.15
983550--983586	19	1.9	20	94	5	67	35	10	5	48	1.61
986923--986978	20	2.8	20	86	5	69	41	14	14	30	1.85
987007--987066	19	3.0	20	81	9	70	31	13	13	41	1.83
987949--988073	19	7.6	18	68	29	91	35	13	15	36	1.87
987947--988081	32	4.2	32	92	0	225	34	13	16	36	1.87
988138--988266	52	2.5	52	92	2	206	35	18	17	27	1.94
996378--996558	30	5.9	30	84	9	222	24	29	16	29	1.97
996383--996558	62	2.9	62	91	2	266	25	30	17	27	1.97
996530--997563	61	16.8	61	87	4	786	20	35	12	31	1.90
997096--997548	34	14.5	34	70	21	170	20	35	12	31	1.90
997400--997520	27	4.2	27	77	13	107	21	35	11	31	1.89
996539--997563	465	2.2	461	89	2	1581	20	35	12	31	1.90
997548--997739	65	3.0	65	88	2	280	28	33	17	20	1.95
997533--997731	33	6.2	32	81	9	230	28	34	17	19	1.95
997735--998233	49	10.1	49	78	9	443	23	24	18	33	1.97
997880--998236	52	6.9	51	78	8	364	23	24	17	33	1.96
997838--998230	103	3.9	102	86	4	485	23	24	18	33	1.97
998142--998276	52	2.5	52	77	4	144	25	24	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998914--998989	32	2.4	32	90	0	116	34	13	15	36	1.87
998933--998957	13	1.9	13	100	0	50	36	16	16	32	1.90
998912--998976	19	3.7	19	73	23	70	32	10	16	40	1.84
999029--999054	13	2.0	13	100	0	52	30	15	15	38	1.88
999042--999170	52	2.5	52	96	0	240	34	18	17	28	1.94
1002985--1003034	22	2.2	23	86	10	68	60	22	0	18	1.37
1004001--1004371	184	2.0	184	99	0	733	28	11	12	47	1.77
1004406--1004444	14	2.9	14	82	17	55	66	0	2	30	1.05
1010195--1010246	16	3.4	14	78	19	50	38	1	7	51	1.42
1010208--1010250	14	2.9	14	83	13	50	34	0	4	60	1.17
1010193--1010260	31	2.1	33	83	5	86	39	1	5	52	1.34
1010223--1010273	15	3.2	16	86	5	68	33	1	3	60	1.26
1010756--1010789	14	2.4	14	90	5	50	41	0	0	58	0.98
1010811--1010862	27	1.9	28	88	7	81	61	1	0	36	1.07
1011212--1011273	32	1.9	32	83	0	79	30	0	8	61	1.25
1011224--1011275	16	3.2	16	83	0	68	32	0	7	59	1.26
1011309--1011344	16	2.2	16	90	0	54	33	2	2	61	1.25
1012231--1012279	16	3.0	17	88	5	66	32	0	4	63	1.13
1012249--1012283	16	2.2	16	100	0	70	34	0	0	65	0.93
1012249--1012309	16	3.8	16	82	0	68	36	1	3	59	1.24
1012802--1012839	15	2.5	16	83	12	53	55	0	2	42	1.14
1013332--1013484	34	4.5	34	81	9	168	39	24	7	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013333--1013484	68	2.2	68	84	2	198	39	25	7	27	1.83
1017892--1018042	34	4.4	34	82	9	173	39	24	8	27	1.84
1023510--1023537	4	7.0	4	100	0	56	75	0	0	25	0.81
1024345--1024383	2	19.5	2	100	0	78	51	0	0	48	1.00
1027252--1027341	19	5.1	18	71	22	75	35	12	15	36	1.85
1027298--1027322	13	1.9	13	100	0	50	36	16	16	32	1.90
1027277--1027349	32	2.3	32	97	0	137	34	12	17	35	1.88
1027372--1027429	21	2.8	21	89	2	82	27	17	12	43	1.84
1029771--1030046	51	5.4	52	81	7	305	29	24	11	34	1.91
1029771--1030079	102	3.0	103	81	7	369	30	23	10	35	1.89

Tables:   1   2   3   4   5   6   7

The End!