genome.fa.s124.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold124
Parameters: 2 7 7 80 10 50 1000
Length:  1034113

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 840 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433722--433842	52	2.3	52	94	0	206	28	18	17	35	1.93
433722--433862	52	2.7	52	85	4	178	29	17	18	34	1.94
433851--433875	13	1.9	13	100	0	50	36	16	16	32	1.90
433895--433961	33	2.0	33	85	0	89	40	13	11	34	1.81
433998--434067	21	3.2	20	74	18	68	41	14	11	32	1.81
434000--434063	24	2.8	22	76	17	60	43	15	9	31	1.78
443719--443761	9	4.8	9	88	8	61	88	11	0	0	0.52
443719--443764	10	4.6	10	86	8	67	86	13	0	0	0.56
443719--443777	21	2.8	20	85	12	75	84	13	0	1	0.69
443719--443764	19	2.4	19	85	0	65	86	13	0	0	0.56
444022--444059	20	1.9	19	89	5	58	78	13	7	0	0.94
445053--445268	30	7.0	30	78	9	193	23	28	16	31	1.96
445053--445301	61	4.0	61	74	11	191	22	29	16	32	1.95
445214--446384	34	35.8	33	76	10	814	19	30	13	37	1.89
445215--446384	67	17.9	64	78	8	915	18	30	13	37	1.89
445215--446384	100	11.9	99	79	8	1026	18	30	13	37	1.89
446381--447154	48	16.8	48	71	14	364	25	25	18	30	1.98
446488--446909	39	9.9	39	68	17	232	26	26	19	27	1.99
446440--446958	87	6.0	87	87	0	714	26	25	19	28	1.99
446435--446957	174	3.0	174	87	0	794	26	25	19	28	1.99
446885--447156	49	5.5	49	81	4	303	23	24	18	33	1.97
446871--447160	150	2.0	148	84	3	377	24	24	17	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448360--448385	13	2.0	13	100	0	52	38	15	15	30	1.88
448342--448405	32	2.0	33	90	3	103	42	15	14	28	1.86
453634--453659	13	2.0	13	100	0	52	38	15	15	30	1.88
453616--453679	32	2.0	33	90	3	103	42	15	14	28	1.86
459947--460000	20	2.7	20	82	2	63	35	11	20	33	1.88
462518--462922	79	5.1	79	78	4	368	30	25	10	33	1.89
462520--462942	158	2.7	157	77	6	460	30	26	10	32	1.90
464205--464244	17	2.2	18	91	8	64	82	15	2	0	0.77
468029--468451	79	5.3	79	86	1	481	28	27	13	30	1.94
469647--470361	61	11.7	62	83	3	862	24	24	19	31	1.98
469647--470310	245	2.7	246	86	2	888	24	24	19	31	1.98
473405--473556	52	2.9	52	87	3	218	33	16	16	33	1.91
473491--473608	32	3.4	32	69	22	103	33	16	18	31	1.93
473472--473631	73	2.2	72	97	1	302	33	15	17	33	1.91
473670--473694	13	1.9	13	100	0	50	32	16	16	36	1.90
473649--473714	32	2.0	33	94	2	116	36	16	12	34	1.86
474344--474896	55	10.4	55	74	14	220	35	15	23	25	1.94
474684--474751	22	3.1	22	64	19	61	32	17	23	26	1.97
474560--475047	49	9.8	49	78	10	433	33	15	24	26	1.95
474609--474996	92	4.0	93	84	9	510	34	16	23	25	1.95
474705--475047	104	3.4	103	83	9	483	33	15	24	25	1.95
474560--475047	196	2.5	199	93	1	811	33	15	24	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475579--475926	89	3.9	88	78	6	299	28	27	14	29	1.96
476180--476334	35	4.4	35	86	0	211	23	25	12	39	1.89
476172--476334	70	2.3	70	90	0	245	23	24	12	39	1.89
476172--476357	70	2.7	70	86	0	219	23	24	11	41	1.87
476490--476830	88	3.9	85	86	4	331	20	25	16	38	1.92
476577--476852	88	3.1	88	89	2	385	19	25	16	38	1.93
476490--476852	44	8.3	43	73	6	282	20	24	16	38	1.93
479560--479633	28	2.6	28	80	0	76	27	31	18	22	1.98
479509--479789	109	2.6	108	82	4	320	28	25	14	31	1.95
479674--479739	28	2.4	27	80	10	71	25	33	15	25	1.95
479725--479841	51	2.3	52	86	4	166	30	27	11	30	1.91
479777--480073	158	1.9	158	87	2	436	28	27	13	30	1.94
479777--480073	79	3.8	78	82	4	364	28	27	13	30	1.94
480013--480132	51	2.4	51	86	0	186	30	25	12	31	1.93
480115--480190	28	2.7	28	87	6	109	21	30	19	28	1.97
481620--481882	83	3.1	82	76	15	211	17	27	14	40	1.88
481678--481966	84	3.4	84	77	11	238	20	25	11	42	1.86
482887--483194	166	1.9	168	87	3	462	31	9	8	50	1.64
483565--483614	22	2.2	23	78	3	57	74	2	24	0	0.93
488744--488908	20	7.8	20	73	15	107	32	16	11	39	1.84
490285--490490	78	2.6	78	83	2	243	28	16	30	24	1.97
490442--490513	28	2.6	28	88	0	99	23	19	34	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491992--492066	20	3.8	20	78	0	87	34	13	12	40	1.81
491992--492069	40	2.0	39	87	2	111	34	12	12	39	1.82
499120--499162	22	1.9	23	85	4	61	72	11	11	4	1.27
499122--499207	40	2.2	39	81	12	95	72	9	12	5	1.28
500543--501501	27	35.1	27	91	2	1470	23	34	14	27	1.93
500543--501501	82	11.7	81	90	2	1470	23	34	14	27	1.93
500543--501501	109	8.8	108	90	2	1470	23	34	14	27	1.93
501493--502117	32	19.6	32	95	0	1072	31	34	18	15	1.92
502644--502718	20	3.8	20	78	0	87	34	13	12	40	1.81
502644--502721	40	2.0	39	87	2	111	34	12	12	39	1.82
507079--507145	33	2.0	33	85	0	89	44	16	13	25	1.84
507165--507219	19	2.9	19	97	0	101	40	14	10	34	1.81
507275--507331	21	2.7	21	94	0	96	36	17	10	35	1.84
510807--511029	79	2.8	79	80	4	209	27	26	15	30	1.96
510984--511080	51	1.9	51	89	4	151	36	25	5	32	1.78
510887--511290	130	3.1	129	75	7	388	29	25	12	32	1.92
511095--511222	51	2.5	51	78	10	138	25	24	14	35	1.94
511184--511370	79	2.4	78	80	2	205	28	26	11	33	1.92
516872--516938	33	2.0	33	88	0	98	34	11	13	40	1.81
516892--516916	13	1.9	13	100	0	50	36	16	16	32	1.90
516965--516992	14	2.0	14	100	0	56	35	14	14	35	1.86
521917--522762	28	29.4	28	79	7	711	28	30	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521920--522762	85	9.8	84	80	7	771	29	30	17	23	1.97
521915--522673	279	2.7	281	81	5	832	28	30	17	23	1.97
521915--522762	141	5.9	143	80	7	604	29	30	17	23	1.97
523770--523916	50	2.9	50	90	5	242	27	19	10	42	1.83
526477--526503	13	2.1	13	100	0	54	29	14	14	40	1.86
526570--526600	13	2.4	13	94	0	53	35	16	12	35	1.87
526554--526620	33	2.0	32	88	11	100	35	13	17	32	1.89
531823--531863	11	3.7	12	84	12	52	2	29	0	68	1.03
531834--531867	11	3.1	11	86	0	50	5	29	0	64	1.17
532561--532617	20	2.8	20	100	0	114	29	19	10	40	1.85
534822--535059	97	2.5	97	92	2	390	26	29	13	31	1.93
542747--542798	19	2.6	21	87	6	72	40	13	13	32	1.83
542830--542855	13	2.0	13	100	0	52	30	15	15	38	1.88
545200--545438	51	4.6	51	85	7	306	30	26	10	32	1.90
545418--545492	27	2.7	27	87	6	98	25	33	18	22	1.97
545369--545571	107	1.9	108	84	5	277	28	27	15	29	1.96
545445--545700	79	3.2	79	79	5	268	26	25	14	33	1.95
552696--552745	21	2.4	22	83	9	61	32	20	0	48	1.50
555092--555153	32	1.9	33	87	9	92	32	16	12	38	1.86
555125--555195	20	3.6	20	90	1	108	33	15	16	33	1.91
556621--556649	14	2.1	14	100	0	58	44	0	0	55	0.99
557980--558005	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557962--558025	32	2.0	33	90	3	103	39	18	14	28	1.90
560226--560275	21	2.3	21	80	10	57	56	4	18	22	1.58
565751--565879	52	2.5	52	94	0	222	30	17	18	33	1.95
565751--565899	52	2.9	51	87	6	219	31	17	18	32	1.94
565975--565999	13	1.9	13	100	0	50	32	16	16	36	1.90
566198--566224	11	2.5	11	100	0	54	40	0	29	29	1.57
566805--566914	58	1.9	58	81	7	134	32	18	29	20	1.96
566958--567113	32	4.8	33	88	4	239	15	19	35	30	1.92
566958--567113	63	2.4	65	91	5	255	15	19	35	30	1.92
567150--567382	29	8.0	29	78	6	229	25	16	27	29	1.97

Tables:   1   2   3   4   5   6   7