genome.fa.s145.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold145
Parameters: 2 7 7 80 10 50 1000
Length:  2608604

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  11  of  15  ( 1729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1929902--1929940	13	3.2	13	89	7	55	56	2	0	41	1.13
1929938--1929969	17	1.9	17	93	6	57	75	0	0	25	0.81
1930609--1930641	2	16.5	2	100	0	66	51	0	48	0	1.00
1931018--1931060	21	2.0	21	86	8	61	41	0	2	55	1.12
1931288--1931332	22	2.2	20	84	8	54	35	2	0	62	1.08
1931732--1931775	22	2.1	20	87	8	61	34	0	0	65	0.93
1933028--1933056	2	14.5	2	100	0	58	51	0	0	48	1.00
1933776--1933834	14	4.0	14	80	6	55	54	1	0	44	1.10
1933800--1933838	10	4.0	10	83	3	53	53	2	0	43	1.14
1933770--1933846	15	4.8	15	70	22	50	54	1	0	44	1.08
1933770--1933855	34	2.6	31	72	16	75	54	2	0	43	1.13
1934772--1934867	26	3.6	26	74	13	72	54	0	1	44	1.07
1934797--1934876	26	2.8	32	78	21	88	53	0	0	46	1.00
1935786--1935842	18	3.2	19	67	20	50	33	0	0	66	0.92
1935851--1935885	17	2.0	18	94	5	63	54	0	0	45	0.99
1935866--1935902	20	1.9	20	88	5	58	54	0	0	45	1.00
1936125--1936177	22	2.3	23	84	12	74	41	0	0	58	0.98
1936105--1936164	30	1.9	32	90	6	97	43	0	0	56	0.99
1936129--1936215	13	6.4	14	71	23	53	35	0	0	64	0.94
1936083--1936171	17	5.1	17	70	22	60	38	1	0	60	1.04
1936098--1936179	30	2.7	30	76	12	87	41	0	0	58	0.98
1937678--1937728	19	2.7	19	75	0	57	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1939373--1939416	23	2.0	22	86	4	61	54	2	0	43	1.12
1940017--1940073	22	2.6	22	68	13	55	43	0	0	56	0.99
1940638--1940729	41	2.2	40	78	16	100	55	1	0	43	1.07
1944513--1944546	2	17.5	2	93	6	61	50	0	0	50	1.00
1951935--1952017	37	2.3	33	79	18	87	55	0	1	43	1.07
1952095--1952137	22	2.0	22	81	9	52	51	0	6	41	1.29
1952473--1952525	19	2.8	19	85	5	63	45	13	1	39	1.54
1953256--1953282	2	13.5	2	100	0	54	48	0	0	51	1.00
1954096--1954122	2	13.5	2	100	0	54	51	0	48	0	1.00
1954423--1954465	20	2.2	20	87	8	61	46	0	0	53	1.00
1956922--1956984	33	1.9	33	83	6	83	55	1	1	41	1.19
1957585--1957650	21	3.2	21	81	14	93	50	0	0	50	1.00
1958564--1958619	26	2.1	27	81	12	64	57	7	1	33	1.37
1958790--1958858	11	7.3	10	73	25	53	39	0	1	59	1.06
1958778--1958867	28	3.2	28	74	21	82	40	0	1	58	1.05
1958784--1958886	21	4.5	22	68	25	63	41	0	0	57	1.05
1963125--1963184	5	11.6	5	82	7	75	36	1	0	61	1.06
1963125--1963205	26	3.2	26	78	13	73	35	1	1	61	1.12
1963126--1963199	10	6.6	12	80	11	54	36	1	1	60	1.13
1964524--1964559	2	18.0	2	100	0	72	50	0	0	50	1.00
1964904--1964937	2	17.0	2	100	0	68	50	0	0	50	1.00
1970807--1970859	24	2.2	25	82	3	63	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1972059--1972135	17	4.3	18	75	18	72	53	0	0	46	1.00
1972061--1972151	38	2.5	36	81	13	98	54	0	0	45	0.99
1972753--1972802	21	2.4	21	90	6	75	52	6	4	38	1.45
1973315--1973382	5	13.4	5	78	9	75	63	0	0	36	0.95
1973315--1973398	21	3.9	21	72	17	73	64	0	0	35	0.94
1973315--1973405	26	3.7	26	78	12	88	64	0	0	35	0.94
1973315--1973383	31	2.3	30	87	7	95	63	0	0	36	0.94
1973316--1973388	14	5.2	14	81	13	71	61	0	0	38	0.96
1973323--1973406	23	3.9	21	70	17	64	64	0	0	35	0.94
1973346--1973416	24	3.2	20	72	16	52	61	0	0	38	0.96
1973588--1973618	4	8.0	4	92	7	55	25	0	0	74	0.82
1979368--1979413	20	2.4	19	85	3	56	50	0	0	50	1.00
1979506--1979537	2	16.5	2	93	6	57	53	0	0	46	1.00
1979928--1979973	25	2.0	23	84	16	60	65	0	0	34	0.93
1981997--1982045	2	24.5	2	100	0	98	51	0	0	48	1.00
1982588--1982629	7	6.1	7	80	5	50	59	0	0	40	0.97
1983780--1983811	2	16.0	2	100	0	64	50	0	0	50	1.00
1984068--1984105	16	2.4	16	86	8	51	52	0	0	47	1.00
1984084--1984140	30	1.9	30	85	7	80	50	0	0	49	1.00
1984750--1984799	23	2.2	22	78	3	55	46	0	2	52	1.12
1985217--1985292	32	2.4	33	89	8	113	38	0	2	59	1.12
1985249--1985297	19	2.6	19	77	9	55	40	2	0	57	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1988173--1988210	2	19.0	2	100	0	76	0	50	0	50	1.00
1989253--1989283	15	2.1	15	93	0	53	64	6	25	3	1.33
1990520--1990587	22	3.0	21	74	16	57	32	2	2	61	1.26
1991474--1991509	17	2.1	17	90	10	56	61	0	0	38	0.96
1991890--1991925	2	18.0	2	100	0	72	50	0	0	50	1.00
1994517--1994542	2	13.0	2	100	0	52	50	0	0	50	1.00
1995655--1995689	17	1.9	19	88	11	56	40	2	0	57	1.14
1995942--1995967	2	13.0	2	100	0	52	50	0	0	50	1.00
2003498--2003537	19	2.2	18	86	4	53	55	0	2	42	1.13
2003532--2003572	9	4.3	10	78	12	50	41	0	0	58	0.98
2003519--2003575	19	2.9	19	75	15	62	42	0	0	57	0.98
2005848--2005884	7	5.1	7	87	6	56	18	0	0	81	0.70
2005848--2005884	15	2.5	15	91	4	58	18	0	0	81	0.70
2007319--2007343	12	2.1	12	100	0	50	64	8	0	28	1.22
2008031--2008063	10	3.5	10	88	12	52	57	0	0	42	0.98
2008022--2008102	33	2.3	36	81	10	96	55	0	2	41	1.13
2008038--2008104	22	3.0	23	75	16	68	56	0	1	41	1.08
2008038--2008103	10	5.7	12	69	25	52	56	0	1	42	1.08
2010397--2010478	41	1.9	43	80	11	98	54	0	1	43	1.07
2010821--2010885	21	3.2	20	76	8	60	43	1	0	55	1.09
2011353--2011399	16	2.8	17	77	6	51	46	0	0	53	1.00
2011354--2011421	22	3.2	22	76	15	63	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2011686--2011741	18	3.3	18	76	19	66	41	0	0	58	0.98
2011674--2011741	31	2.1	33	84	10	88	44	0	0	55	0.99
2011684--2011738	16	3.4	16	76	19	60	38	0	0	61	0.96
2012347--2012439	11	8.2	11	76	16	59	34	0	1	64	1.01
2012349--2012400	13	4.0	14	78	16	58	34	0	0	65	0.93
2012323--2012398	30	2.5	30	80	14	86	35	0	2	61	1.10
2012345--2012431	4	20.2	4	75	15	59	32	0	1	66	0.99
2012375--2012455	36	2.2	36	81	14	96	33	1	2	62	1.16
2012576--2012642	31	2.2	31	84	10	84	37	4	2	55	1.36
2013103--2013152	23	2.2	23	82	7	57	58	6	0	36	1.23
2014825--2014900	12	6.9	11	75	15	52	39	2	48	9	1.49
2014815--2014933	42	2.8	42	89	2	186	42	3	46	7	1.48
2014890--2014939	18	2.8	18	81	6	57	44	6	46	4	1.47
2020288--2020359	23	3.2	23	69	25	71	50	2	4	43	1.36
2020275--2020363	45	2.0	44	93	2	151	48	4	4	42	1.43
2020289--2020361	22	3.3	22	69	9	67	47	2	4	45	1.36
2021055--2021146	43	2.1	44	87	2	132	42	1	15	41	1.54
2023017--2023061	16	2.8	16	86	3	54	35	4	0	60	1.17
2023535--2023642	2	54.5	2	70	12	53	46	1	4	47	1.34
2024001--2024049	20	2.5	20	93	3	82	51	4	8	36	1.51
2027214--2027309	32	3.0	32	98	0	183	40	14	12	32	1.83
2030324--2030363	8	4.9	9	85	14	52	82	0	17	0	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2030331--2030363	13	2.6	13	90	4	50	81	0	18	0	0.68
2034790--2034816	2	13.5	2	100	0	54	51	0	0	48	1.00
2035973--2036012	14	2.9	14	82	14	55	42	2	0	55	1.13
2040160--2040190	3	10.3	3	92	0	53	0	3	35	61	1.12
2042179--2042209	3	10.3	3	92	0	53	32	3	0	64	1.09
2043756--2043785	2	15.0	2	100	0	60	50	0	0	50	1.00
2044078--2044125	23	2.1	22	84	3	60	50	2	2	45	1.25
2045013--2045413	133	3.0	133	90	1	651	42	4	7	44	1.53
2045514--2045605	14	6.7	14	75	13	57	45	3	2	48	1.30
2045531--2045571	21	2.0	21	90	0	64	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15