Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold145
Parameters: 2 7 7 80 10 50 1000
Length:  2608604

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1729 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2560652--2560692
20
2.0
21
85
4
57
51
0
0
48
1.00
2564018--2564070
25
2.1
26
89
3
81
45
0
0
54
0.99
2565223--2565274
26
2.0
27
84
3
70
51
1
0
46
1.12
2576280--2576332
24
2.4
21
82
14
70
37
0
0
62
0.96
2576482--2576586
41
2.5
40
81
14
108
48
2
1
46
1.27
2577215--2577311
34
2.8
33
83
6
113
37
15
7
40
1.75
2578699--2578732
15
2.3
15
90
10
52
32
0
0
67
0.91
2578982--2579011
6
5.2
6
92
8
53
0
13
0
86
0.57
2579107--2579168
17
3.7
18
69
18
53
40
0
0
59
0.97
2579131--2579205
28
2.7
28
84
10
84
41
2
0
56
1.13
2579238--2579277
14
3.0
14
80
20
50
42
0
0
57
0.98
2579242--2579294
20
2.8
20
78
16
58
41
0
1
56
1.10
2579429--2579475
19
2.5
19
86
3
60
68
4
25
2
1.19
2579552--2579604
27
2.0
27
85
7
72
41
0
1
56
1.10
2580383--2580433
25
2.0
24
85
11
66
60
1
0
37
1.08
2580599--2580668
29
2.4
30
80
7
90
40
0
1
58
1.07
2581072--2581106
18
1.9
18
88
11
54
11
14
0
74
1.08
2587668--2587735
36
1.9
35
85
8
93
29
0
2
67
1.05
2587669--2587745
36
2.1
36
81
9
86
32
1
3
62
1.22
2587815--2587857
19
2.3
18
81
14
52
37
0
2
60
1.10
2588752--2588791
16
2.3
18
87
8
57
32
2
2
62
1.22
2592223--2592308
16
5.1
16
69
17
57
45
0
1
53
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2592223--2592269
16
2.8
17
80
6
60
44
0
2
53
1.12
2592260--2592303
22
2.0
22
90
0
70
54
0
0
45
0.99
2593151--2593223
27
2.7
27
87
6
103
39
0
1
58
1.06
2593205--2593294
17
5.8
16
65
19
55
48
4
1
45
1.29
2593208--2593301
28
3.2
28
72
16
91
51
4
1
43
1.28
2593270--2593341
27
3.0
23
80
15
83
54
1
0
44
1.08
2593279--2593363
27
3.1
27
86
3
100
54
1
0
44
1.07
2593287--2593363
28
2.9
27
86
3
102
57
1
0
41
1.07
2596078--2596120
16
2.5
17
81
7
52
44
0
2
53
1.13
2596121--2596207
38
2.3
39
75
23
96
58
1
2
37
1.18
2596122--2596177
11
4.9
11
73
16
51
58
1
1
37
1.19
2596122--2596174
25
2.2
24
86
10
72
60
1
1
35
1.19
2597766--2597824
21
2.7
23
76
10
70
49
0
0
50
1.00
2597819--2597895
30
2.5
30
78
14
77
46
0
0
53
1.00
2598916--2599028
17
7.1
16
74
12
72
45
0
3
51
1.18
2598998--2599036
16
2.4
16
91
0
60
41
0
2
56
1.13
2599018--2599160
60
2.4
61
79
10
161
40
0
0
58
1.03
2599050--2599124
26
3.2
22
75
22
64
44
0
0
56
0.99
2599062--2599128
17
3.9
17
72
16
59
40
0
0
59
0.97
2599109--2599182
38
1.9
37
86
10
105
39
1
0
59
1.06
2600144--2600198
28
2.0
28
88
0
83
36
1
10
50
1.48
2600140--2600207
28
2.6
25
78
13
82
36
1
10
51
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2602102--2602127
13
2.0
13
100
0
52
23
23
7
46
1.78
2602822--2602893
29
2.4
29
76
15
76
41
1
0
56
1.07
2603719--2603834
28
4.4
28
73
17
95
49
0
0
50
1.06
2603727--2603799
23
3.3
23
66
21
57
50
0
0
49
1.00
2603716--2603826
39
2.8
42
73
15
103
49
0
0
49
1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!