genome.fa.s145.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold145
Parameters: 2 7 7 80 10 50 1000
Length:  2608604

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  13  of  15  ( 1729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2248042--2248072	2	15.5	2	100	0	62	51	0	48	0	1.00
2250491--2250575	37	2.3	36	84	6	100	54	2	0	43	1.13
2251526--2251560	17	2.1	17	88	0	52	51	0	0	48	1.00
2251659--2251689	16	2.0	15	93	6	53	58	0	0	41	0.98
2251866--2251900	17	2.0	18	88	5	54	22	25	22	28	1.99
2252943--2252971	15	2.0	15	93	6	51	24	6	0	68	1.13
2254766--2254819	26	2.1	26	96	0	99	42	7	14	35	1.74
2255090--2255148	26	2.3	26	79	5	66	59	1	0	38	1.08
2255292--2255341	22	2.1	25	85	10	70	54	4	0	42	1.19
2255705--2255738	5	7.2	5	87	12	54	38	0	0	61	0.96
2255835--2255887	18	2.9	17	81	15	54	33	1	0	64	1.05
2256666--2256716	12	3.9	12	78	16	57	39	11	5	43	1.66
2263784--2263823	13	3.1	13	85	7	55	62	2	2	32	1.22
2267040--2267105	22	2.9	24	70	27	63	43	1	0	54	1.09
2267040--2267125	41	2.0	42	82	8	104	41	2	0	55	1.12
2276831--2276870	20	1.9	22	85	10	57	45	0	2	52	1.14
2276901--2276949	14	3.4	14	75	5	53	67	0	2	30	1.02
2278822--2278849	2	14.0	2	100	0	56	50	0	0	50	1.00
2279221--2279270	22	2.1	25	85	10	70	42	0	4	54	1.19
2279258--2279306	18	2.6	19	80	6	55	46	0	6	46	1.27
2279752--2279805	26	2.1	26	96	0	99	35	14	7	42	1.74
2280055--2280106	22	2.4	22	75	9	52	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2280184--2280216	2	16.5	2	100	0	66	51	0	0	48	1.00
2285120--2285166	20	2.3	20	85	0	58	51	2	0	46	1.13
2293870--2293939	17	4.3	15	78	8	50	32	0	1	65	1.01
2295165--2295600	179	2.4	182	82	5	535	38	8	8	43	1.67
2296108--2296159	16	3.2	16	83	2	59	57	0	0	42	0.98
2296120--2296163	16	2.8	16	89	0	61	56	0	0	43	0.99
2296662--2296698	15	2.5	15	95	0	65	59	2	0	37	1.12
2297559--2297655	16	5.8	17	74	9	67	60	1	0	38	1.03
2297565--2297653	9	9.3	10	68	24	59	59	1	0	39	1.05
2297565--2297656	19	4.8	19	67	22	59	60	1	0	38	1.04
2297595--2297657	29	2.1	30	85	8	85	63	1	0	34	1.04
2297718--2297770	27	2.0	25	85	7	70	43	1	3	50	1.30
2297732--2297793	30	1.9	30	84	12	79	43	3	1	51	1.27
2298081--2298130	24	2.1	24	92	0	82	44	0	0	56	0.99
2299603--2299667	30	2.2	30	83	8	80	41	0	1	56	1.08
2299880--2299956	40	2.0	40	82	12	97	45	0	0	54	0.99
2300316--2300394	17	4.6	17	68	24	58	45	2	1	50	1.23
2301943--2301971	2	14.5	2	100	0	58	51	0	0	48	1.00
2302134--2302159	7	3.7	7	100	0	52	57	0	0	42	0.98
2302794--2302843	14	3.5	14	77	2	55	46	2	0	52	1.12
2304264--2304302	6	6.7	6	82	5	53	35	0	0	64	0.94
2305285--2305319	14	2.5	14	90	0	52	42	8	0	48	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2305488--2305550	19	3.4	19	75	16	53	55	6	1	36	1.35
2307190--2307227	19	2.0	19	90	10	60	60	0	0	39	0.97
2307308--2307357	19	2.6	19	83	3	64	50	0	2	48	1.12
2307352--2307391	21	1.9	21	90	10	64	62	0	0	37	0.95
2307989--2308039	16	3.2	16	75	5	50	39	0	0	60	0.97
2308481--2308510	2	15.0	2	100	0	60	50	0	0	50	1.00
2310329--2310360	2	16.0	2	100	0	64	50	0	0	50	1.00
2312369--2312466	18	5.2	19	77	12	69	41	0	0	58	0.98
2312345--2312425	32	2.5	33	84	10	103	43	0	0	56	0.99
2312402--2312493	25	3.6	25	70	20	73	38	1	0	60	1.04
2312345--2312443	33	3.0	33	80	15	116	41	0	0	58	0.98
2314275--2314357	29	2.8	30	73	12	75	49	1	1	48	1.16
2315985--2316022	17	2.2	18	85	4	51	52	0	2	44	1.14
2316146--2316231	31	2.9	29	77	16	95	52	0	0	47	1.00
2316593--2316643	24	2.2	24	86	6	70	47	0	0	52	1.00
2317280--2317307	2	14.0	2	100	0	56	50	0	0	50	1.00
2321169--2321214	2	23.0	2	100	0	92	50	0	0	50	1.00
2323182--2323225	20	2.2	20	84	8	54	52	0	0	47	1.00
2323164--2323222	27	2.0	30	87	12	88	52	0	0	47	1.00
2323543--2323576	14	2.3	15	85	10	52	67	0	0	32	0.91
2323962--2324002	20	2.1	20	90	4	66	56	0	0	43	0.99
2324003--2324036	17	2.0	17	94	0	59	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2324000--2324063	17	4.0	16	76	9	51	48	1	0	50	1.10
2324003--2324070	15	4.5	16	75	13	65	48	1	0	50	1.10
2324573--2324605	2	16.5	2	100	0	66	51	0	0	48	1.00
2325541--2325595	16	3.7	15	75	15	51	40	0	3	56	1.17
2325533--2325596	14	4.3	14	74	18	58	39	0	4	56	1.20
2327161--2327216	12	4.2	13	82	11	60	51	1	0	46	1.11
2334179--2334231	2	26.5	2	100	0	106	49	0	0	50	1.00
2334534--2334575	19	2.2	20	91	4	68	45	0	7	47	1.30
2334604--2334639	17	2.2	17	90	5	56	72	0	5	22	1.05
2334603--2334639	16	2.2	18	80	14	51	72	0	5	21	1.04
2334971--2335004	17	1.9	18	88	5	52	64	2	0	32	1.08
2339114--2339144	2	15.5	2	100	0	62	51	48	0	0	1.00
2339648--2339749	6	16.7	6	70	20	52	53	2	0	42	1.22
2339686--2339737	22	2.4	21	84	12	61	57	1	0	40	1.10
2340140--2340179	3	13.3	3	100	0	80	32	0	0	67	0.91
2340394--2340428	10	3.3	10	92	8	52	71	0	0	28	0.86
2341056--2341095	20	2.0	20	85	0	53	70	5	2	22	1.19
2342841--2342879	14	2.9	14	88	3	53	64	0	0	35	0.94
2342834--2342879	14	3.5	13	80	16	51	63	0	0	36	0.95
2343311--2343347	15	2.7	15	84	16	53	29	0	0	70	0.88
2345132--2345221	33	2.8	33	81	8	96	36	3	1	58	1.22
2345430--2345479	20	2.6	19	78	6	55	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2345457--2345503	22	2.1	22	85	14	62	36	0	0	63	0.94
2345992--2346024	13	2.5	13	90	9	50	51	0	0	48	1.00
2346040--2346077	20	1.9	20	84	10	51	44	2	2	50	1.30
2346108--2346141	16	2.1	16	94	0	59	85	0	0	14	0.60
2349022--2349066	2	22.0	2	90	4	72	48	4	0	46	1.22
2349956--2349984	2	14.5	2	100	0	58	48	0	0	51	1.00
2356233--2356257	2	12.5	2	100	0	50	52	0	0	48	1.00
2356777--2356824	12	4.0	13	79	15	50	27	6	2	64	1.28
2359568--2359628	27	2.2	29	80	11	74	55	1	3	39	1.26
2360573--2360623	24	2.1	24	85	3	66	43	3	5	47	1.46
2360693--2360731	4	9.8	4	82	0	51	51	20	2	25	1.60
2361612--2361663	25	2.1	25	88	0	77	44	5	1	48	1.38
2363727--2363823	43	2.2	45	83	10	119	40	2	1	56	1.18
2363795--2363842	25	2.0	24	84	8	62	39	2	0	58	1.10
2363877--2363932	21	2.6	22	82	5	78	53	1	0	44	1.11
2363831--2363937	48	2.2	48	82	9	128	56	2	0	41	1.14
2363898--2363959	25	2.5	24	73	21	56	56	1	0	41	1.09
2365806--2365839	16	2.1	16	94	0	59	32	8	14	44	1.76
2366512--2366568	28	2.1	26	87	6	78	38	0	0	61	0.96
2366521--2366586	28	2.4	28	82	10	73	43	0	0	56	0.99
2366791--2366832	2	21.5	2	90	4	68	50	2	0	47	1.14
2368872--2368901	3	10.0	3	100	0	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2369120--2369208	40	2.2	40	80	7	101	35	1	1	61	1.11
2369159--2369203	17	2.7	16	86	13	56	31	0	2	66	1.04
2369123--2369212	19	4.6	19	71	16	69	35	1	1	62	1.10
2369595--2369627	15	2.2	15	89	10	50	72	0	3	24	0.98
2370602--2370656	24	2.3	24	84	12	69	45	0	0	54	0.99
2371577--2371619	19	2.3	19	80	19	54	53	0	0	46	1.00
2372077--2372138	2	33.0	2	77	18	62	50	1	1	46	1.20
2372228--2372289	25	2.6	25	75	14	67	41	0	1	56	1.09
2374299--2374374	24	3.1	24	79	7	91	36	19	21	22	1.95
2376573--2376621	21	2.3	21	78	0	53	65	2	0	32	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15