genome.fa.s145.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold145
Parameters: 2 7 7 80 10 50 1000
Length:  2608604

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  14  of  15  ( 1729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2377129--2377188	20	3.0	20	82	7	68	36	0	0	63	0.95
2378281--2378319	21	1.9	20	85	15	53	58	0	0	41	0.98
2384087--2384125	2	20.0	2	89	5	62	48	0	2	48	1.15
2385357--2385389	2	16.5	2	100	0	66	51	0	48	0	1.00
2391975--2392019	21	2.1	21	95	0	81	37	11	8	42	1.72
2401139--2401343	102	2.0	102	85	4	274	34	21	14	29	1.93
2403313--2403410	46	2.1	46	84	3	126	29	9	8	53	1.62
2403517--2403580	12	5.4	12	73	15	53	51	0	0	48	1.00
2403517--2403581	24	2.8	23	81	6	78	50	0	0	49	1.00
2404023--2404049	13	2.1	13	100	0	54	59	0	0	40	0.98
2405391--2405427	10	3.9	10	86	10	51	16	35	0	48	1.46
2405391--2405427	18	2.1	18	90	10	58	16	35	0	48	1.46
2405391--2405439	18	2.7	18	84	12	57	14	36	2	46	1.56
2405644--2405740	40	2.4	40	91	0	149	31	21	10	36	1.87
2406299--2406337	19	2.1	19	85	9	53	74	0	20	5	1.01
2406303--2406347	21	2.1	22	87	4	65	77	0	20	2	0.87
2407189--2407578	58	6.8	58	79	8	352	30	7	13	48	1.70
2407221--2407538	170	1.8	171	82	5	408	28	7	14	49	1.70
2407219--2407578	170	2.1	172	80	7	399	29	7	13	49	1.70
2408004--2408039	16	2.1	18	90	10	58	66	0	5	27	1.13
2410102--2410177	19	4.1	19	71	23	63	40	2	0	56	1.13
2410086--2410166	36	2.3	35	83	12	103	41	3	0	54	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2416350--2416390	14	3.0	14	82	10	50	60	0	0	39	0.96
2416413--2416451	19	2.2	17	86	9	51	64	0	0	35	0.94
2416770--2416828	28	2.1	28	81	6	66	57	3	0	38	1.15
2417123--2417168	14	3.4	14	84	3	58	41	0	2	56	1.11
2418532--2418863	74	4.6	72	79	5	348	31	1	12	55	1.45
2418528--2418861	146	2.3	148	83	5	398	31	1	11	54	1.46
2419833--2419880	25	2.0	24	84	12	62	41	4	6	47	1.48
2420096--2420127	16	2.1	16	88	11	50	68	0	0	31	0.90
2420104--2420164	23	2.5	24	81	5	70	62	3	1	32	1.21
2420511--2420655	71	2.0	70	82	9	175	42	0	0	55	1.09
2420591--2420649	18	3.1	17	81	18	64	49	1	0	49	1.11
2421137--2421204	28	2.3	30	80	14	72	45	1	0	52	1.09
2421247--2421280	16	2.1	16	88	0	50	38	0	0	61	0.96
2421295--2421352	19	3.0	19	82	2	71	58	0	0	41	0.98
2421313--2421383	33	2.2	30	77	20	72	59	2	0	38	1.12
2426651--2426812	81	2.0	82	97	1	308	43	19	9	27	1.82
2430173--2430236	24	2.3	27	80	20	62	54	0	0	45	0.99
2430257--2430367	43	2.7	41	81	12	111	47	0	0	52	1.00
2430728--2430778	21	2.5	20	81	12	59	52	0	0	47	1.00
2431135--2431165	15	2.0	16	93	6	55	64	0	0	35	0.94
2431334--2431389	19	2.7	21	74	23	55	39	3	0	57	1.16
2431602--2431640	20	2.0	19	90	5	60	58	0	2	38	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2431625--2431678	20	2.9	19	76	10	58	68	1	3	25	1.16
2431740--2431781	14	2.9	14	77	22	50	52	2	0	45	1.13
2432114--2432276	5	32.8	5	69	17	65	61	0	0	38	0.96
2432121--2432276	27	5.7	27	74	20	112	62	0	0	37	0.96
2432180--2432215	18	1.9	18	88	5	54	61	0	0	38	0.96
2432216--2432262	16	2.9	15	82	17	51	61	0	0	38	0.96
2432127--2432296	11	15.4	12	67	23	65	62	0	0	37	1.00
2432236--2432296	6	10.7	6	73	16	58	60	0	1	37	1.07
2440481--2440580	37	2.7	37	77	17	93	39	3	0	58	1.14
2440536--2440623	28	3.2	27	79	15	83	37	3	0	59	1.15
2440551--2440613	23	2.6	25	80	16	71	38	3	0	58	1.14
2440538--2440631	26	3.5	27	79	13	88	37	3	0	59	1.13
2440536--2440631	13	7.1	14	72	20	71	37	3	0	59	1.13
2440656--2440714	23	2.6	23	76	15	59	38	3	0	57	1.15
2441720--2441750	15	2.1	15	93	0	53	35	19	19	25	1.95
2442495--2442538	17	2.6	17	86	10	56	40	0	0	59	0.98
2449839--2449869	3	10.3	3	92	0	53	3	35	0	61	1.12
2453705--2453747	20	2.0	22	82	8	54	27	0	0	72	0.85
2454604--2454631	2	14.0	2	100	0	56	50	0	0	50	1.00
2455329--2455378	25	2.0	25	84	11	66	42	0	2	56	1.11
2455536--2455585	2	25.0	2	87	0	73	46	2	0	52	1.12
2467291--2467344	16	3.4	16	78	12	58	53	1	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2467312--2467352	16	2.5	16	80	4	55	48	2	0	48	1.14
2468428--2468676	124	2.0	123	85	5	333	44	2	9	43	1.50
2469464--2469514	16	3.2	16	86	8	61	58	0	0	41	0.98
2470671--2470726	17	3.2	17	77	10	60	58	1	0	39	1.08
2471079--2471111	2	16.5	2	100	0	66	51	0	0	48	1.00
2472850--2472885	13	2.8	13	87	4	56	50	0	2	47	1.15
2474453--2474494	2	21.0	2	100	0	84	50	0	0	50	1.00
2476364--2476403	21	1.9	21	85	10	55	57	2	2	37	1.26
2478091--2478135	23	2.0	23	86	0	63	33	15	22	28	1.95
2478354--2478491	46	2.9	48	80	8	147	31	7	18	42	1.77
2479088--2479185	30	3.3	29	84	4	124	41	1	3	54	1.23
2479088--2479194	29	3.6	29	81	6	108	40	0	3	55	1.24
2480649--2480692	20	2.2	20	83	0	52	15	9	0	75	1.05
2481481--2481526	2	23.0	2	100	0	92	50	0	0	50	1.00
2483436--2483481	2	23.0	2	81	0	56	0	50	0	50	1.00
2486506--2486534	12	2.4	12	100	0	58	0	41	0	58	0.98
2486617--2486651	17	2.1	17	89	10	54	42	0	0	57	0.99
2488731--2488769	14	2.7	15	85	14	55	53	5	5	35	1.45
2488731--2488764	16	2.1	16	94	0	59	52	5	2	38	1.41
2491132--2491156	2	12.5	2	100	0	50	0	48	0	52	1.00
2491843--2491880	2	19.0	2	100	0	76	50	0	50	0	1.00
2492811--2492850	20	2.0	21	85	5	55	30	20	2	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2494670--2494742	16	4.5	17	72	14	57	43	0	1	54	1.08
2494725--2494784	12	5.2	12	73	18	56	50	0	0	50	1.00
2495531--2495564	15	2.1	16	89	10	52	35	0	0	64	0.94
2495523--2495631	46	2.3	49	80	10	129	46	0	0	53	1.00
2495555--2495629	25	3.1	22	74	14	60	48	0	0	52	1.00
2496411--2496435	2	12.5	2	100	0	50	48	0	0	52	1.00
2497157--2497198	17	2.5	17	81	18	52	64	0	4	30	1.14
2498235--2498259	6	4.2	6	100	0	50	48	0	0	52	1.00
2500563--2500601	3	13.0	3	89	10	62	66	0	33	0	0.92
2515677--2515703	2	13.5	2	100	0	54	51	0	48	0	1.00
2524342--2524374	3	11.0	3	100	0	66	66	0	0	33	0.92
2525063--2525097	2	18.0	2	94	5	63	48	0	0	51	1.00
2531330--2531390	32	1.9	32	93	6	106	44	0	13	42	1.43
2537170--2537210	2	20.5	2	100	0	82	0	48	0	51	1.00
2539391--2539436	22	2.1	22	83	0	56	6	28	6	58	1.48
2542359--2542402	17	2.6	17	81	0	52	65	0	2	31	1.05
2548691--2548733	21	2.0	21	91	8	70	69	0	0	30	0.88
2549536--2549676	36	4.2	32	73	15	108	40	0	0	58	1.03
2549555--2549670	37	3.2	39	77	15	122	43	0	0	55	1.05
2549598--2549626	10	2.7	11	89	10	51	44	0	0	55	0.99
2549552--2549694	36	4.1	36	75	10	104	42	0	0	56	1.04
2550041--2550082	15	2.5	17	82	17	52	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2550025--2550094	25	3.0	23	78	12	70	42	0	0	57	0.99
2550683--2550773	12	7.8	11	73	14	76	56	2	0	41	1.12
2550576--2550754	71	2.5	70	78	9	186	53	2	2	41	1.28
2550707--2550773	26	2.7	23	77	18	73	58	1	0	40	1.07
2553421--2553450	7	4.3	7	100	0	60	70	0	0	30	0.88
2557113--2557152	8	4.8	8	84	9	53	80	0	2	17	0.83
2557113--2557162	25	1.9	25	88	8	73	74	2	4	20	1.08
2557813--2557856	17	2.6	17	85	3	63	52	0	2	45	1.13
2560072--2560101	15	2.0	15	93	0	51	76	6	0	16	0.99
2560050--2560099	25	2.0	26	84	11	68	74	2	0	24	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15