genome.fa.s17.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold17
Parameters: 2 7 7 80 10 50 1000
Length:  1562583

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 1002 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502364--502429	32	2.0	33	94	2	116	36	16	12	34	1.86
503975--504049	20	3.8	20	87	5	98	46	12	12	29	1.77
516430--516458	12	2.3	13	94	5	51	82	17	0	0	0.66
517176--517252	21	3.7	21	87	5	111	33	11	19	35	1.88
517289--517339	19	2.7	19	100	0	102	31	11	19	37	1.88
517311--517384	32	2.3	32	90	0	112	36	16	16	31	1.91
517290--517371	19	4.6	19	79	17	86	35	13	18	32	1.90
519899--519974	27	2.8	28	85	2	100	23	35	21	19	1.96
519957--520178	52	4.3	52	82	2	234	29	26	12	31	1.92
519957--520178	104	2.1	103	85	4	286	29	26	12	31	1.92
520161--520265	28	3.8	28	88	0	111	21	36	20	20	1.96
532757--532826	14	5.2	13	75	13	52	84	8	7	0	0.78
532761--532826	15	4.5	14	78	19	64	84	9	6	0	0.76
532761--532803	10	4.3	10	77	11	52	86	11	2	0	0.67
532761--532826	30	2.2	30	86	7	91	84	9	6	0	0.76
532759--532826	13	4.9	13	76	18	57	83	8	7	0	0.80
532758--532839	15	5.5	15	80	11	55	81	7	10	0	0.86
532805--532839	13	2.7	13	86	0	52	80	0	20	0	0.72
533822--535284	55	26.0	55	83	8	1758	28	28	19	23	1.98
533823--535284	171	8.7	165	89	5	1938	28	28	19	23	1.98
533822--535284	281	5.2	272	87	6	1810	28	28	19	23	1.98
534532--534621	26	3.3	26	68	14	74	28	33	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535373--535462	43	2.1	42	81	8	101	17	27	10	44	1.81
535973--536024	21	2.5	21	90	0	77	34	7	19	38	1.80
535949--536099	75	2.0	75	97	0	284	39	12	13	33	1.83
536048--536145	21	4.7	21	92	2	144	34	10	18	36	1.85
536182--536245	19	3.7	18	74	23	66	32	14	17	35	1.89
536202--536258	13	3.9	13	74	24	51	36	14	14	35	1.86
536183--536294	32	3.5	32	86	1	145	35	15	16	32	1.90
538825--538899	27	2.7	29	85	6	102	25	36	18	20	1.95
538885--539104	52	4.2	52	79	4	169	31	25	9	32	1.88
538936--539107	52	3.3	51	79	8	195	30	26	10	32	1.90
539087--539163	28	2.8	28	84	4	93	22	32	20	24	1.98
539117--539351	79	3.0	78	76	5	240	24	28	15	31	1.96
541066--542096	31	33.5	31	78	6	923	23	29	15	31	1.95
541059--542096	61	16.9	61	84	3	1174	22	29	15	31	1.95
541059--542096	92	11.2	92	87	2	1329	22	29	15	31	1.95
542857--542926	33	2.1	34	86	7	99	35	21	11	31	1.89
542954--543009	19	2.9	19	87	10	78	35	16	14	33	1.88
542995--543021	13	2.1	13	100	0	54	40	14	14	29	1.86
543549--543615	21	3.3	21	72	21	70	28	29	4	37	1.77
543546--543615	22	3.4	22	73	18	78	27	31	4	37	1.76
552366--552464	27	3.5	27	79	16	119	18	32	16	33	1.93
552373--552563	34	5.9	33	79	11	193	18	33	13	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552373--552563	66	3.0	65	80	11	198	18	33	13	34	1.90
552560--553396	49	17.8	47	73	14	527	25	24	18	32	1.97
552554--553307	92	8.1	92	82	8	771	25	24	18	32	1.97
552795--552959	39	4.0	39	72	16	125	28	24	19	27	1.98
552563--553008	87	5.0	87	82	7	520	26	23	18	30	1.98
552701--553307	141	4.4	136	71	16	356	25	24	18	31	1.97
554207--554232	13	2.0	13	100	0	52	38	15	15	30	1.88
559622--559647	13	2.0	13	100	0	52	38	15	15	30	1.88
559600--559667	33	2.1	33	91	2	111	33	13	16	36	1.87
559700--559752	20	2.7	20	87	0	70	32	15	11	41	1.82
559751--559803	20	2.7	19	80	8	61	30	11	15	43	1.81
560318--560362	22	2.0	22	91	8	74	35	28	0	35	1.58
560381--560453	25	3.2	25	60	28	63	35	26	1	36	1.65
560338--560455	42	2.5	48	78	19	158	36	24	1	37	1.66
560366--560454	42	2.1	42	100	0	178	35	24	2	37	1.68
561811--561863	20	2.5	21	84	12	72	3	24	49	22	1.66
562126--562166	22	2.0	21	86	13	59	41	4	21	31	1.74
562300--562333	13	2.6	13	90	0	50	38	17	11	32	1.86
564977--565032	19	2.9	19	76	10	60	32	16	14	37	1.88
667513--667551	18	2.0	20	85	9	55	20	51	23	5	1.67
669593--669636	19	2.2	20	84	4	54	43	9	15	31	1.79
669677--669741	33	2.0	33	88	8	98	36	18	12	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681895--681946	20	2.7	20	93	3	88	28	11	19	40	1.86
681980--682032	20	2.7	20	90	0	79	30	15	13	41	1.85
692304--692354	20	2.6	20	87	3	68	33	15	15	35	1.90
692301--692354	19	2.8	19	85	2	72	31	14	16	37	1.89
692323--692477	62	2.5	63	93	3	260	30	20	17	30	1.96
694087--694120	3	11.3	3	93	0	59	35	0	35	29	1.58
698697--698730	10	3.3	10	88	8	50	32	23	0	44	1.54
698720--698769	21	2.4	22	83	9	61	32	20	0	48	1.50
701115--701171	20	3.0	20	82	7	73	33	17	15	33	1.92
704060--704103	14	3.0	14	81	18	54	0	25	0	75	0.81
704201--704247	14	3.5	13	77	13	51	10	19	0	70	1.16
704224--704255	14	2.4	13	94	5	55	12	9	0	78	0.97
706257--706462	43	4.9	41	67	18	118	48	12	21	17	1.80
706191--706487	85	3.5	85	78	6	316	46	11	22	19	1.81
706632--707686	35	30.2	35	76	5	688	43	10	22	23	1.84
707933--708367	91	4.8	90	83	3	493	28	16	27	28	1.97
707933--708376	181	2.5	180	79	7	490	28	15	27	28	1.96
717281--717343	22	3.1	22	73	21	73	39	3	26	30	1.72
717908--717947	20	2.0	21	95	5	73	42	15	12	30	1.83
717993--718018	13	2.0	13	100	0	52	30	15	15	38	1.88
717972--718041	34	2.1	33	86	7	97	34	10	21	34	1.87
721733--722045	154	2.0	154	100	0	626	40	12	18	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722288--722388	51	2.0	51	82	0	121	36	12	23	26	1.91
722324--722980	79	8.4	79	80	4	668	34	13	24	28	1.93
722322--722980	157	4.2	157	82	4	695	34	13	24	28	1.93
722395--722980	236	2.5	234	85	5	756	34	13	24	27	1.93
724594--724704	55	2.0	55	91	0	177	45	12	24	17	1.82
729436--729600	41	4.1	41	74	8	115	41	13	24	20	1.88
729466--729630	40	4.1	40	77	3	161	42	15	23	18	1.88
730211--730607	67	6.0	67	83	4	412	41	12	21	24	1.88
732999--733031	14	2.4	14	90	5	50	66	0	3	30	1.06
734547--734716	81	2.1	81	80	2	180	48	9	21	20	1.77
740112--740227	32	3.4	32	68	17	99	38	10	18	32	1.84
740109--740248	70	2.0	70	100	0	280	37	11	20	31	1.88
740303--740744	28	15.7	28	89	3	663	23	17	30	29	1.97
761982--762312	79	4.2	78	81	4	351	33	14	24	27	1.94
762278--762414	51	2.7	50	80	5	141	35	13	22	28	1.92
764711--764866	20	7.8	19	73	18	113	41	15	16	26	1.88
764799--764828	13	2.3	13	100	0	60	40	13	16	30	1.87
774725--774800	24	3.2	23	75	17	75	77	9	7	5	1.11
776119--776181	30	2.1	30	87	0	90	20	31	14	33	1.92
776267--776631	160	2.3	155	87	6	516	30	30	16	21	1.96
776245--776638	96	4.1	94	79	6	418	31	30	16	21	1.95
776261--776638	64	6.0	64	78	6	342	31	30	16	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
776793--776917	52	2.4	52	81	5	162	24	20	15	39	1.91
776854--777114	113	2.4	107	79	7	292	27	21	13	37	1.91
777007--777141	61	2.2	62	80	11	154	26	22	11	38	1.89
777902--777926	13	1.9	13	100	0	50	36	16	16	32	1.90
778708--778762	21	2.6	22	77	8	60	40	12	14	32	1.84
778783--778821	20	2.0	20	89	0	60	43	10	12	33	1.77
798037--798066	11	2.7	11	100	0	60	0	10	33	56	1.32
798261--798404	22	7.0	22	72	16	139	27	24	10	37	1.88
798294--798366	10	7.1	10	74	11	67	24	27	8	39	1.84
798294--798366	20	3.5	20	78	7	92	24	27	8	39	1.84

Tables:   1   2   3   4   5   6   7   8   9