genome.fa.s17.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold17
Parameters: 2 7 7 80 10 50 1000
Length:  1562583

Tables:   1   2   3   4   5   6   7   8   9   

This is table  6  of  9  ( 1002 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922674--922729	12	4.6	12	78	12	69	87	12	0	0	0.54
923670--923823	62	2.5	62	86	5	206	27	29	15	27	1.96
923681--923830	30	5.0	30	87	3	205	26	30	16	28	1.96
923839--924133	34	9.5	33	69	20	181	20	34	13	31	1.91
923868--924163	27	9.9	27	71	18	205	20	35	13	30	1.91
923835--924160	61	5.3	61	94	0	546	20	35	13	30	1.91
924168--924392	33	6.8	33	86	5	303	28	29	17	23	1.97
924399--924817	43	9.0	45	78	12	409	24	25	18	31	1.98
924399--924862	91	4.9	91	84	5	545	24	25	18	31	1.98
924399--924819	134	3.0	137	82	9	464	24	24	18	31	1.98
924669--924862	52	3.8	51	85	6	216	25	26	17	30	1.97
924781--924888	51	2.1	51	83	8	130	23	30	16	29	1.96
924769--925293	156	3.3	156	69	16	476	22	27	16	34	1.95
924669--925364	325	2.1	325	94	0	1230	22	27	16	33	1.95
924995--925187	52	3.8	50	87	5	246	24	27	18	30	1.98
924995--925213	52	4.3	51	82	11	191	23	28	17	30	1.97
926660--926707	21	2.4	21	86	6	64	41	6	18	33	1.76
926668--926707	19	2.0	21	85	9	57	42	5	20	32	1.73
927289--927339	20	2.6	20	90	3	77	31	15	17	35	1.92
927256--927317	32	1.9	33	87	9	92	30	16	14	38	1.88
928147--928210	19	3.7	19	70	23	68	35	10	17	35	1.85
928150--928244	32	3.0	32	88	0	145	37	12	14	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928328--928453	52	2.4	52	89	0	198	35	17	19	26	1.94
935613--935638	13	2.0	13	100	0	52	38	15	15	30	1.88
935690--935732	19	2.3	19	95	0	77	37	16	11	34	1.85
936045--936100	20	2.8	20	94	0	94	51	12	12	23	1.73
939056--939094	18	2.2	18	86	4	53	46	7	0	46	1.31
939819--939882	32	2.0	32	96	0	119	43	17	12	26	1.84
949901--950204	29	10.5	31	86	7	168	24	17	28	29	1.97
949882--950682	28	28.1	28	80	7	767	24	17	28	29	1.97
949882--950682	57	14.0	57	79	8	796	24	17	28	29	1.97
949886--950682	85	9.3	84	80	6	766	24	17	28	29	1.97
951923--951969	17	2.8	17	83	6	60	0	2	19	78	0.85
962727--962765	20	1.9	21	89	5	62	56	10	10	23	1.63
962956--962996	20	2.0	20	85	0	55	36	26	9	26	1.88
963081--963132	20	2.7	20	85	8	72	36	17	15	30	1.91
966954--967105	79	1.9	80	81	6	184	30	13	28	27	1.94
967122--967447	104	3.1	102	83	4	438	32	11	25	30	1.92
967122--967447	52	6.3	51	81	5	377	32	11	25	30	1.92
969952--970008	21	2.8	21	91	2	89	45	12	17	24	1.83
970032--970102	32	2.2	32	92	5	117	36	18	12	32	1.88
970059--970083	13	1.9	13	100	0	50	32	16	16	36	1.90
970694--970909	119	1.8	117	79	11	253	40	14	24	20	1.89
970889--971744	55	15.0	54	82	10	833	25	19	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970888--971770	171	5.1	171	87	6	1116	25	19	27	27	1.99
970889--971740	232	3.7	224	87	6	1087	24	19	27	27	1.99
971481--971622	28	5.1	30	61	21	76	21	19	29	29	1.97
972752--972803	16	3.3	15	76	10	50	0	5	9	84	0.77
985261--985792	52	10.1	51	67	16	221	30	12	26	29	1.93
985347--985482	51	2.6	52	80	1	148	32	13	23	30	1.94
985465--985540	27	2.8	28	85	2	100	19	21	35	23	1.96
985362--985791	159	2.7	159	91	2	659	29	13	27	29	1.95
985627--985698	27	2.6	27	84	2	81	22	20	33	23	1.97
988519--988575	27	2.1	27	100	0	114	28	10	15	45	1.79
993531--993939	79	5.2	79	77	6	312	35	12	23	27	1.92
993516--993939	158	2.7	152	79	11	415	36	12	23	28	1.91
994174--994413	49	5.0	49	86	8	332	25	25	17	30	1.97
994231--994369	43	3.1	43	90	7	206	25	25	18	29	1.98
994231--994422	92	2.0	94	89	5	291	25	25	17	31	1.97
994323--994535	52	3.7	55	78	9	180	24	23	14	38	1.92
1001541--1001601	14	4.5	14	81	6	72	73	0	24	1	0.92
1001549--1001599	18	2.8	18	81	3	66	72	0	25	1	0.95
1001550--1001620	8	8.4	8	71	11	52	76	2	19	1	0.99
1001895--1001937	3	14.3	3	100	0	86	32	0	0	67	0.91
1005563--1005587	13	1.9	13	100	0	50	32	16	16	36	1.90
1007559--1007584	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1007539--1007604	33	2.0	33	87	0	96	25	15	16	42	1.87
1015456--1016309	55	14.9	54	84	9	938	27	28	19	24	1.99
1015422--1016309	116	7.7	116	88	5	1134	26	28	19	24	1.99
1015458--1016309	171	5.0	169	83	9	939	27	28	19	24	1.99
1017197--1017222	13	2.0	13	100	0	52	30	15	15	38	1.88
1017177--1017242	33	2.0	33	87	0	96	25	15	16	42	1.87
1019648--1019724	28	2.8	28	86	4	93	23	35	19	22	1.96
1022877--1022915	8	4.8	8	90	3	60	12	2	25	58	1.47
1023112--1023150	13	3.0	13	88	0	60	33	20	12	33	1.91
1023592--1023636	20	2.1	22	88	8	67	24	48	22	4	1.68
1024978--1025044	37	1.9	35	88	11	102	29	25	11	32	1.92
1025502--1025527	13	2.0	13	100	0	52	30	15	15	38	1.88
1025566--1025641	21	3.7	21	82	3	109	28	18	11	40	1.86
1025586--1025659	20	3.7	20	81	3	103	31	20	13	35	1.91
1025566--1025659	41	2.3	41	100	0	188	29	19	12	38	1.89
1026276--1026319	21	2.1	21	83	8	54	25	31	4	38	1.76
1027603--1027627	13	1.9	13	100	0	50	32	16	16	36	1.90
1030740--1030806	37	1.9	35	88	11	102	29	25	11	32	1.92
1031264--1031289	13	2.0	13	100	0	52	30	15	15	38	1.88
1031328--1031403	21	3.7	21	80	3	100	30	18	11	39	1.87
1031348--1031421	20	3.7	20	81	3	103	31	20	13	35	1.91
1031328--1031421	41	2.3	41	98	0	179	30	19	12	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1032596--1032620	13	1.9	13	100	0	50	32	16	16	36	1.90
1032720--1032745	13	2.0	13	100	0	52	38	15	15	30	1.88
1032702--1032765	33	2.0	32	90	3	101	39	20	14	26	1.90
1037154--1037795	164	3.9	164	81	5	667	30	11	9	48	1.70
1037154--1037795	328	2.0	328	83	7	831	30	11	9	48	1.70
1039411--1039466	3	18.7	3	100	0	112	67	0	0	32	0.91
1040314--1040663	147	2.4	147	83	4	436	25	15	17	41	1.89
1040101--1040753	148	4.4	145	75	8	482	25	14	19	40	1.89
1042143--1042195	19	2.7	20	91	2	90	35	15	18	30	1.92
1045183--1045231	21	2.4	22	80	13	59	63	0	8	28	1.23
1050242--1050276	13	2.8	13	91	8	56	88	0	0	11	0.51
1050281--1050337	21	2.7	21	97	0	105	33	10	19	36	1.86
1050393--1050460	19	3.9	19	78	21	85	35	11	14	38	1.83
1050414--1050438	13	1.9	13	100	0	50	36	16	16	32	1.90
1050395--1050457	32	2.0	32	96	0	117	34	12	15	36	1.86
1050500--1050525	13	2.0	13	100	0	52	30	15	15	38	1.88
1050480--1050546	33	2.0	33	88	0	98	25	14	16	43	1.86
1052873--1053154	102	2.8	102	84	6	365	29	25	12	32	1.92
1052873--1053160	153	1.9	153	82	5	359	28	26	12	32	1.92
1052874--1053160	51	5.6	50	83	4	308	28	26	12	32	1.92
1062581--1062712	70	1.9	69	85	4	185	31	30	18	20	1.96
1133251--1133383	51	2.6	51	89	0	194	30	16	12	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1137944--1138005	33	1.9	32	83	3	79	41	16	12	29	1.85
1138364--1138400	18	2.1	18	89	0	56	29	13	18	37	1.90
1148697--1148783	26	3.3	28	72	16	69	48	1	3	47	1.26
1150937--1151006	28	2.7	27	84	8	83	47	1	1	50	1.19
1152464--1152576	55	2.1	55	94	0	199	37	9	10	42	1.73
1153500--1153525	12	2.2	12	100	0	52	23	23	38	15	1.92
1153533--1153566	3	11.3	3	100	0	68	64	0	0	35	0.94
1159233--1159292	29	2.0	30	83	3	77	28	6	20	45	1.76
1160097--1160122	11	2.4	11	100	0	52	76	7	0	15	0.99
1160948--1161005	2	29.5	2	96	3	109	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9