Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold17
Parameters: 2 7 7 80 10 50 1000
Length:  1562583

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1002 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1456214--1456289
21
3.7
21
76
3
91
27
17
11
43
1.84
1456235--1456307
20
3.6
20
77
3
92
30
19
13
36
1.90
1456214--1456309
41
2.3
41
96
0
174
28
17
12
41
1.86
1458792--1458829
13
2.9
13
96
0
67
31
15
18
34
1.92
1460909--1460939
15
2.1
15
93
0
53
12
22
16
48
1.80
1464252--1464276
11
2.3
11
100
0
50
36
8
16
40
1.77
1465018--1465043
13
2.0
13
100
0
52
30
15
15
38
1.88
1465082--1465157
21
3.7
21
80
3
100
28
17
11
42
1.84
1465103--1465175
20
3.6
20
81
3
101
31
19
13
35
1.91
1465082--1465175
41
2.3
41
98
0
179
29
18
12
39
1.88
1470583--1470622
13
3.1
13
92
0
71
32
15
15
37
1.88
1470712--1470739
11
2.5
11
100
0
56
28
7
7
57
1.52
1471267--1471657
164
2.4
164
83
3
457
49
8
10
31
1.67
1474886--1474910
3
8.3
3
100
0
50
32
0
0
68
0.90
1477896--1477930
12
2.8
12
91
4
52
62
0
5
31
1.18
1482032--1482065
17
2.0
17
100
0
68
82
0
5
11
0.83
1482074--1482130
21
2.7
21
97
0
105
33
10
19
36
1.86
1482186--1482253
19
3.9
19
78
21
85
35
11
14
38
1.83
1482207--1482231
13
1.9
13
100
0
50
36
16
16
32
1.90
1482188--1482250
32
2.0
32
96
0
117
34
12
15
36
1.86
1482293--1482318
13
2.0
13
100
0
52
30
15
15
38
1.88
1482273--1482339
33
2.0
33
88
0
98
25
14
16
43
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1484788--1484860
27
2.7
27
87
6
94
23
34
21
20
1.97
1484843--1485013
53
3.3
49
75
10
162
29
25
11
32
1.91
1484996--1485077
28
2.9
28
82
7
96
24
31
17
26
1.97
1493977--1494004
13
2.2
13
100
0
56
14
25
7
53
1.66
1495069--1495097
6
5.0
6
91
8
51
82
0
0
17
0.66
1495450--1495741
155
1.9
155
82
0
368
36
21
17
23
1.95
1496021--1496313
160
1.8
162
87
1
437
39
12
12
35
1.82
1496436--1496464
15
2.0
15
93
6
51
48
17
0
34
1.47
1497405--1497459
25
2.4
22
82
11
65
5
20
0
74
1.01
1498085--1498791
165
4.3
164
79
8
700
51
9
10
28
1.68
1498085--1498791
332
2.1
331
80
6
783
51
9
10
28
1.68
1500589--1500629
21
2.0
21
95
0
73
41
12
4
41
1.64
1510889--1510927
21
1.9
20
85
15
53
35
15
0
48
1.45
1512399--1512445
19
2.4
20
85
3
69
31
12
14
40
1.84
1512377--1512445
20
3.5
19
78
7
68
30
13
14
42
1.84
1516705--1516816
48
2.3
50
92
3
183
45
12
14
27
1.81
1516721--1516816
28
3.7
27
73
23
98
47
11
14
26
1.78
1516749--1516786
20
1.9
20
94
0
67
50
10
10
28
1.70
1522491--1522529
12
3.2
12
89
7
60
69
0
10
20
1.17
1539165--1539648
252
1.9
252
96
0
896
44
11
10
32
1.75

Tables:   1   2   3   4   5   6   7   8   9

The End!