genome.fa.s178.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold178
Parameters: 2 7 7 80 10 50 1000
Length:  1196275

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 693 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330136--330493	159	2.3	158	84	2	443	32	18	14	35	1.91
334083--334479	159	2.5	158	84	3	433	31	18	14	36	1.90
335978--336031	20	2.7	20	88	0	81	42	12	14	29	1.83
336063--336130	33	2.1	32	83	8	84	36	16	14	32	1.89
344188--344233	23	2.0	23	88	12	69	36	0	28	34	1.58
344789--344839	20	2.5	20	80	0	66	43	13	13	29	1.83
344870--344937	33	2.1	32	88	2	100	35	16	13	35	1.87
345895--347302	476	3.0	473	83	2	1725	30	17	14	37	1.89
347057--347394	159	2.1	159	80	2	356	33	17	13	35	1.89
347103--347460	159	2.3	159	81	1	414	32	17	14	34	1.91
346637--347934	633	2.0	634	82	3	1585	31	18	14	36	1.90
347272--350771	475	7.3	471	76	8	2823	30	18	14	36	1.90
350771--351670	474	1.9	471	86	1	1264	30	18	13	37	1.89
350928--352510	840	1.9	839	85	3	2180	30	18	13	37	1.90
353970--362351	475	17.9	473	80	6	8745	30	18	14	37	1.90
358424--361934	158	22.4	158	65	15	732	30	18	14	37	1.90
362640--362710	20	3.5	20	81	7	99	38	12	14	35	1.84
362639--362730	40	2.3	40	100	0	184	38	13	15	33	1.86
362660--362730	20	3.5	20	81	7	99	36	14	16	32	1.89
362639--362751	40	2.8	39	92	5	147	38	15	15	30	1.88
362720--362856	53	2.6	53	92	1	220	37	19	16	25	1.93
366722--366746	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366825--366874	20	2.5	20	93	0	82	30	24	14	32	1.94
366863--366983	52	2.3	52	95	0	215	34	17	18	29	1.94
374121--374191	12	6.2	11	73	14	54	81	4	14	0	0.83
374121--374181	19	3.3	19	77	11	63	81	4	13	0	0.83
374121--374203	28	2.9	29	81	10	82	78	4	16	0	0.92
374126--374195	23	3.1	24	80	17	80	78	4	17	0	0.90
375171--375352	27	6.2	27	72	16	139	20	35	13	30	1.91
375148--375875	34	22.6	33	74	13	565	20	34	13	32	1.91
375144--375839	61	10.9	61	76	14	554	20	34	13	31	1.91
375148--375875	100	7.6	96	76	12	527	20	34	13	32	1.91
375521--375580	27	2.2	27	90	0	93	20	38	13	28	1.90
375722--375810	29	3.0	29	86	5	115	19	34	15	30	1.93
375877--376013	32	4.2	33	90	2	217	27	35	18	18	1.94
376013--376574	49	11.8	49	80	10	614	25	24	17	31	1.97
376059--376517	92	5.0	88	89	5	553	25	24	17	31	1.97
376008--376517	141	3.6	141	85	7	693	25	25	17	31	1.97
376427--376576	52	2.8	54	84	2	196	26	24	15	34	1.94
376427--376579	54	2.9	53	85	1	200	25	23	15	35	1.94
377394--377418	13	1.9	13	100	0	50	36	16	16	32	1.90
377374--377440	33	2.0	33	88	0	98	32	11	14	40	1.83
377496--377545	20	2.5	20	93	0	82	30	24	14	32	1.94
377534--377654	52	2.3	52	95	0	215	34	17	18	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378567--378592	13	2.0	13	100	0	52	38	15	15	30	1.88
383380--383420	21	2.0	21	85	9	57	41	12	7	39	1.70
383500--383636	53	2.6	53	92	1	220	37	18	17	26	1.93
383660--383690	10	3.1	10	95	0	53	25	29	3	41	1.71
383770--383795	13	2.0	13	100	0	52	30	15	15	38	1.88
384588--388438	474	8.1	474	82	4	4294	30	17	14	37	1.90
388140--388525	160	2.4	159	81	5	406	31	18	15	34	1.92
388265--388575	159	2.0	158	85	1	426	31	17	15	36	1.91
388295--388609	158	2.0	159	83	2	393	30	17	15	36	1.91
387758--389069	632	2.1	632	82	4	1585	31	17	15	36	1.90
389766--390170	157	2.6	156	81	4	431	31	16	15	36	1.90
389865--390190	159	2.1	157	83	3	404	33	15	15	35	1.89
389348--390576	630	1.9	634	83	4	1608	31	16	15	36	1.90
389963--391509	459	3.3	460	80	7	1657	30	17	14	36	1.90
390895--392210	633	2.1	635	86	1	1818	30	17	14	37	1.89
390895--392210	159	8.3	159	70	8	689	30	17	14	37	1.89
391691--392342	159	4.1	157	68	13	370	30	17	14	37	1.89
392790--392845	19	2.9	19	89	2	76	32	16	16	35	1.90
392876--392927	20	2.6	20	87	6	70	32	13	21	32	1.92
399010--399069	23	2.8	20	86	13	93	40	10	18	31	1.84
401098--401135	13	2.9	13	85	11	51	34	23	15	26	1.95
401194--401242	21	2.3	21	86	6	73	34	10	26	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401356--401661	158	1.9	159	87	3	447	30	18	15	36	1.91
401507--401888	204	1.9	204	88	3	581	30	17	15	37	1.90
401706--403385	158	10.7	160	67	12	692	30	18	13	37	1.89
404057--404088	16	2.0	16	93	0	55	21	25	3	50	1.64
403905--404223	175	1.8	175	83	2	426	32	18	12	36	1.88
404927--405447	265	2.0	266	84	4	687	29	18	15	36	1.92
405243--409999	159	30.3	158	66	13	747	30	17	14	37	1.90
408105--409032	476	2.0	475	81	6	1119	31	18	13	35	1.91
408176--409514	633	2.1	635	83	4	1639	30	18	14	35	1.91
409750--412658	158	18.4	158	68	10	1108	31	18	13	36	1.90
408814--411897	475	6.5	474	83	3	3454	31	18	13	36	1.90
408814--411897	947	3.3	940	82	4	3541	31	18	13	36	1.90
408128--412530	159	27.9	157	67	12	1203	31	18	13	36	1.90
411806--413927	475	4.5	469	82	7	2262	30	18	14	37	1.90
413745--414086	157	2.2	157	84	2	452	31	17	14	36	1.90
413745--414138	157	2.5	157	81	4	409	31	17	14	36	1.90
413264--414562	630	2.1	633	83	3	1616	30	17	14	37	1.90
414830--415193	158	2.3	156	81	2	395	30	16	14	38	1.89
413925--415034	475	2.3	472	82	3	1194	30	16	13	38	1.88
415021--416083	476	2.3	467	84	3	1355	31	18	13	36	1.90
417406--417456	23	2.2	23	85	0	66	21	17	29	31	1.96
418937--418976	13	3.1	13	85	0	62	37	12	15	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418970--419000	15	2.1	15	100	0	62	51	12	16	19	1.76
418966--418998	15	2.1	17	88	11	52	51	15	12	21	1.75
423760--433378	476	20.3	475	83	3	11103	36	13	18	31	1.90
423804--433252	949	10.0	950	87	2	11502	36	13	18	31	1.90
434177--434202	13	2.0	13	100	0	52	30	23	15	30	1.95
434276--434307	14	2.3	14	100	0	64	34	6	28	31	1.82
434292--434347	21	2.6	22	94	5	105	37	10	25	26	1.88
434335--434365	10	3.1	10	90	0	53	41	6	29	22	1.78
434389--434525	53	2.6	53	94	1	238	26	18	18	37	1.93
434513--434566	20	2.7	20	80	8	65	29	12	16	40	1.86
434603--434645	21	2.0	21	86	8	61	39	9	11	39	1.74
434847--449744	476	31.4	473	82	3	16483	36	13	18	30	1.90
434847--449744	951	15.7	949	84	3	16872	36	13	18	30	1.90
435002--449627	159	92.4	158	65	12	3100	36	14	18	30	1.90
451752--451820	31	2.3	30	83	11	81	28	21	24	24	1.99
451579--451788	107	2.0	105	81	3	242	33	14	24	27	1.94
454177--454252	20	3.8	20	85	3	91	47	13	9	30	1.73
454941--455113	61	2.8	61	83	4	206	27	16	28	26	1.97
455073--455153	40	2.0	40	97	0	153	37	14	27	20	1.92
455016--455215	102	2.0	102	87	2	294	33	16	25	25	1.96
455118--455240	62	2.0	60	88	3	183	30	18	26	25	1.98
455153--455336	101	1.8	100	81	5	228	28	18	27	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455254--455521	123	2.2	124	90	4	418	27	20	26	26	1.99
455254--455521	61	4.4	61	87	4	369	27	20	26	26	1.99
455376--455682	162	1.9	162	89	2	474	27	20	27	24	1.99
455113--455716	285	2.1	285	92	0	985	28	18	27	24	1.98
455527--455715	61	3.1	60	83	5	227	27	19	28	25	1.98
455547--455738	61	3.2	57	81	7	174	25	20	27	26	1.99
467381--467406	13	2.0	13	100	0	52	30	15	15	38	1.88
467492--467544	13	4.5	13	71	26	55	32	13	18	35	1.90
467476--467544	33	2.1	33	89	5	104	30	13	20	36	1.90
468345--468399	20	2.7	21	85	2	76	41	14	16	27	1.87

Tables:   1   2   3   4   5   6