genome.fa.s178.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold178
Parameters: 2 7 7 80 10 50 1000
Length:  1196275

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 693 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014626--1014698	20	3.7	19	87	7	85	28	16	16	38	1.90
1015750--1016192	159	2.8	158	72	6	392	32	19	11	36	1.88
1015822--1016307	159	3.1	156	69	11	403	31	19	13	35	1.91
1015750--1016392	318	2.0	317	85	3	862	32	19	12	35	1.90
1016068--1016962	478	1.9	477	85	3	1237	30	17	14	36	1.90
1016766--1017151	197	2.0	197	84	3	508	31	18	12	37	1.89
1016285--1017636	674	2.0	674	86	3	1880	31	17	13	36	1.90
1016963--1024188	477	14.9	474	72	11	3912	30	18	13	36	1.90
1016963--1024181	954	7.4	947	72	11	4526	30	18	13	36	1.90
1019290--1019383	47	2.0	48	89	2	145	27	12	22	37	1.91
1020531--1024187	158	23.0	159	67	10	953	30	18	13	36	1.90
1021618--1021947	175	1.9	175	85	1	455	31	20	13	33	1.92
1021793--1024187	474	5.0	474	84	3	3073	30	19	13	36	1.90
1021787--1024187	947	2.5	944	86	3	3196	30	19	13	36	1.90
1025828--1025888	9	7.1	9	76	10	65	45	0	40	13	1.43
1025798--1025917	42	2.9	41	86	5	159	45	0	41	12	1.42
1025807--1025898	24	4.2	23	71	18	79	44	0	41	14	1.45
1025873--1025910	18	2.1	18	90	0	58	47	0	39	13	1.42
1031942--1034192	159	14.2	157	68	12	778	31	18	13	36	1.90
1031935--1034404	476	5.2	474	85	3	3238	31	18	13	36	1.90
1039952--1040028	28	2.8	27	86	9	102	28	16	31	23	1.96
1040017--1040400	51	7.4	52	71	12	259	32	11	25	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040016--1040189	52	3.4	50	80	10	199	32	10	25	31	1.90
1040220--1040293	27	2.7	27	85	2	94	22	18	35	22	1.96
1042825--1042878	13	3.7	13	74	25	54	35	16	12	35	1.87
1043495--1044447	59	16.4	60	82	9	1063	26	19	26	26	1.99
1043481--1044449	179	5.5	178	84	7	1181	27	19	26	26	1.99
1043487--1044444	238	4.1	229	84	8	1172	26	19	26	26	1.99
1044305--1044387	26	3.1	26	67	21	71	24	20	27	27	1.99
1044363--1044547	100	1.9	100	91	0	307	28	19	28	23	1.98
1055900--1055926	4	6.8	4	100	0	54	77	0	0	22	0.76
1057987--1058063	28	2.8	27	86	9	102	28	16	31	23	1.96
1058051--1058271	51	4.3	51	82	6	241	32	10	26	30	1.90
1058203--1058381	79	2.3	79	90	1	270	30	16	26	25	1.97
1058334--1058407	27	2.7	27	85	2	85	21	22	32	22	1.98
1058392--1058514	51	2.4	51	83	5	149	32	12	23	31	1.91
1060913--1060964	13	3.5	13	73	26	50	36	17	13	32	1.89
1060921--1060983	19	3.7	17	76	24	62	34	17	14	33	1.90
1060913--1060985	32	2.3	32	95	0	128	34	17	13	34	1.90
1061658--1061776	42	2.8	42	90	0	184	9	46	1	42	1.46
1061691--1061766	12	6.9	11	78	15	61	10	48	1	39	1.46
1061686--1061746	9	7.1	9	72	10	56	11	44	1	42	1.50
1063382--1072022	159	54.9	157	66	12	2472	30	18	13	36	1.90
1063382--1077264	475	29.3	476	78	9	5305	30	19	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1066967--1068316	635	2.2	615	84	5	1746	31	18	14	35	1.91
1068064--1073795	475	12.2	476	83	4	6593	30	18	13	36	1.90
1072236--1073562	158	8.4	158	69	9	443	30	18	14	37	1.90
1078888--1078963	12	6.9	11	75	15	52	39	2	48	9	1.49
1078887--1078972	24	3.8	24	72	17	85	41	2	45	10	1.51
1078878--1078996	42	2.8	42	92	0	193	42	2	46	8	1.47
1084205--1084901	159	4.4	157	66	13	370	30	19	12	37	1.89
1083978--1086823	475	6.0	476	85	1	3628	30	19	12	36	1.90
1083978--1086823	951	3.0	946	86	2	3804	30	19	12	36	1.90
1091790--1091869	30	2.7	30	92	3	126	8	45	3	42	1.53
1091815--1091854	21	1.9	21	89	0	62	10	42	2	45	1.51
1093502--1101531	951	8.5	950	88	2	10678	30	20	13	36	1.91
1094136--1101531	476	15.6	475	85	1	9565	30	20	13	36	1.91
1101390--1101681	150	2.0	146	91	2	467	31	17	14	37	1.89
1100917--1102141	621	2.0	608	83	5	1554	31	19	13	36	1.90
1102366--1105474	158	19.7	158	67	9	1156	30	20	13	35	1.91
1101536--1107774	475	13.3	473	86	3	8022	30	19	13	36	1.90
1106224--1107445	159	7.7	157	67	11	408	30	19	13	36	1.90
1106277--1107445	158	7.4	157	67	12	507	30	19	13	36	1.90
1115037--1115103	33	2.0	33	85	0	89	25	32	16	25	1.96
1115990--1116062	20	3.7	19	75	15	69	26	17	17	38	1.92
1116030--1116084	20	2.8	19	86	2	65	38	14	14	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1116048--1116168	63	1.9	63	81	6	147	37	17	14	30	1.90
1116898--1121036	476	8.7	475	83	2	5020	30	18	13	36	1.90
1116898--1121036	953	4.4	951	85	2	5160	30	18	13	36	1.90
1120391--1121030	159	4.0	157	67	12	403	31	19	13	35	1.91
1122250--1122293	23	1.9	23	81	9	54	36	22	9	31	1.86
1122700--1122752	20	2.7	20	90	0	79	33	18	13	33	1.90
1123492--1123536	22	2.0	22	95	0	81	17	28	4	48	1.66
1131446--1131483	20	2.0	20	94	5	69	36	15	10	36	1.82
1131630--1131654	13	1.9	13	100	0	50	36	8	16	40	1.77
1131969--1136369	475	9.3	475	85	1	5599	36	14	18	31	1.90
1142640--1142665	13	2.0	13	100	0	52	38	15	15	30	1.88
1142618--1142685	33	2.1	32	91	8	111	32	16	16	35	1.91
1145259--1145295	13	2.8	13	91	0	56	32	16	16	35	1.91
1156837--1162387	475	11.8	446	72	14	2007	36	13	17	31	1.89
1157260--1174485	476	36.3	473	77	7	13249	36	13	18	31	1.90
1162199--1162573	186	2.0	188	86	4	526	33	15	20	31	1.93
1163585--1163632	20	2.4	20	92	0	78	52	12	16	18	1.75
1164576--1169511	159	31.3	155	64	13	672	36	13	18	31	1.90
1172255--1174485	945	2.3	946	84	3	2865	36	13	18	31	1.89
1174888--1174941	20	2.7	20	82	5	65	31	12	16	38	1.87
1183018--1183111	47	2.0	46	89	2	143	38	9	26	25	1.87
1183688--1183714	13	2.1	13	100	0	54	29	14	14	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183698--1183756	19	3.1	19	85	2	73	37	15	11	35	1.84
1183782--1183835	20	2.7	20	88	5	74	33	12	16	37	1.87
1184539--1188848	947	4.6	949	83	4	4953	35	13	19	31	1.90
1194129--1196217	475	4.4	462	81	8	1947	35	14	18	32	1.90
1194130--1196252	948	2.2	943	82	5	2391	35	14	18	32	1.90

Tables:   1   2   3   4   5   6

The End!