genome.fa.s185.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold185
Parameters: 2 7 7 80 10 50 1000
Length:  1073966

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 836 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300627--300682	20	2.8	20	86	0	76	39	12	12	35	1.81
300713--300764	20	2.5	21	84	3	70	32	15	11	40	1.83
301229--301264	17	2.1	18	89	5	56	66	0	0	33	0.92
303011--303049	15	2.6	15	84	12	53	38	2	0	58	1.12
309675--309736	30	2.1	30	100	0	124	40	16	9	33	1.81
311257--311339	42	2.0	42	90	0	130	28	10	13	46	1.76
312723--312843	51	2.3	52	82	1	154	29	11	12	46	1.77
312726--312856	52	2.5	51	81	1	154	30	11	12	45	1.77
315165--315567	79	5.1	77	72	9	260	30	23	10	35	1.88
323273--323297	13	1.9	13	100	0	50	32	16	16	36	1.90
323306--323434	52	2.5	52	94	0	222	34	17	17	30	1.94
337291--337346	1	56.0	1	81	0	67	91	8	0	0	0.43
337291--337346	16	3.5	16	87	7	87	91	8	0	0	0.43
338806--338916	35	3.2	35	82	3	118	18	34	11	36	1.87
338917--339082	63	2.6	65	87	9	254	30	35	18	16	1.92
338917--339075	32	5.0	32	88	4	232	29	35	18	16	1.93
339804--339932	52	2.5	52	93	0	213	34	17	17	30	1.93
345956--346017	28	2.2	29	82	8	74	45	0	0	54	0.99
345982--346024	5	8.8	5	80	14	54	39	0	0	60	0.97
345984--346032	23	2.1	24	85	11	66	40	0	0	59	0.98
346048--346172	33	4.1	30	76	15	98	52	0	0	47	1.06
346048--346109	27	2.2	29	88	8	92	56	0	1	41	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346093--346132	13	3.1	13	88	0	62	55	0	0	45	0.99
346117--346211	33	2.8	33	84	10	104	48	0	1	50	1.07
346233--346461	117	2.0	114	87	2	332	26	20	15	37	1.92
347553--347611	13	4.8	12	76	21	59	66	3	3	27	1.24
347560--347616	24	2.4	24	97	2	107	66	3	3	26	1.24
347599--347692	32	2.6	35	76	20	88	56	0	1	42	1.06
347651--347716	20	3.3	19	71	20	55	60	0	0	39	0.97
347688--347735	18	2.5	19	86	6	71	58	0	2	39	1.10
347666--347722	24	2.5	24	83	13	75	63	0	0	36	0.95
347635--347727	11	8.4	11	70	18	59	59	0	0	40	0.98
347635--347735	40	2.6	38	75	17	100	57	0	0	41	1.05
348485--348525	21	2.0	21	95	0	73	41	0	0	58	0.98
350171--350231	24	2.5	24	82	10	79	39	1	0	59	1.08
351172--351214	17	2.6	16	82	13	52	46	0	2	51	1.13
352376--352407	14	2.4	14	94	5	57	68	0	0	31	0.90
356307--356335	15	1.9	15	100	0	58	24	20	13	41	1.89
356779--356811	2	16.5	2	100	0	66	51	0	0	48	1.00
356858--356912	29	2.0	27	85	7	74	41	0	1	56	1.10
356859--356914	15	4.2	13	78	13	60	41	0	1	57	1.09
357592--357628	18	2.0	19	85	15	51	45	0	0	54	1.00
359270--359323	19	2.8	20	83	13	69	64	12	7	14	1.47
360713--360750	16	2.4	16	86	4	51	44	0	5	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365154--365290	19	7.7	19	74	23	120	36	16	12	34	1.87
365173--365229	13	3.9	13	76	24	60	35	15	14	35	1.88
365147--365248	32	3.2	32	91	5	170	37	15	12	34	1.86
365766--365836	20	3.5	20	84	3	72	36	12	12	38	1.82
379743--379804	10	5.8	10	78	19	63	85	9	3	1	0.78
379744--379793	1	50.0	1	79	0	55	90	8	2	0	0.54
381024--381947	28	32.0	29	88	4	1241	28	32	17	21	1.96
381024--381947	86	10.7	87	87	5	1241	28	32	17	21	1.96
382512--382586	20	3.8	19	80	3	78	33	12	13	41	1.81
382512--382589	40	2.0	39	85	7	104	33	11	14	41	1.81
387211--387260	26	2.0	25	84	11	66	42	0	0	58	0.98
388721--388999	139	2.0	139	97	0	522	31	10	20	36	1.87
390721--391227	270	1.9	270	93	0	879	36	11	12	39	1.79
391202--391578	128	2.9	127	82	7	424	42	13	10	33	1.78
391706--391739	15	2.2	16	89	5	52	64	0	8	26	1.22
392484--392536	22	2.3	23	80	3	63	5	22	0	71	1.06
392786--392831	20	2.3	20	92	0	74	30	30	21	17	1.96
393164--393596	169	2.6	168	84	6	553	49	9	12	28	1.71
401934--401973	2	20.0	2	86	0	53	47	0	2	50	1.14
405861--405896	17	2.1	17	89	0	54	66	19	5	8	1.38
407192--407226	2	17.5	2	87	0	52	48	2	2	45	1.32
407226--407258	2	16.5	2	100	0	66	0	0	48	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409065--409116	21	2.3	24	87	12	83	69	0	0	30	0.89
411227--411309	35	2.3	38	79	10	93	51	1	0	46	1.08
411702--411726	13	1.9	13	100	0	50	36	16	16	32	1.90
411682--411747	32	2.0	33	94	2	116	34	12	16	36	1.86
411821--411949	52	2.5	52	94	0	222	36	17	16	29	1.92
415621--415668	25	2.0	24	87	4	69	31	8	25	35	1.85
415610--415732	65	1.9	65	91	0	201	34	9	20	35	1.85
420650--420676	2	13.5	2	100	0	54	48	0	0	51	1.00
420768--420856	44	2.0	44	100	0	178	13	17	33	34	1.89
421931--421995	34	1.9	34	93	0	112	21	16	21	40	1.92
422387--422485	24	3.9	25	71	20	73	51	3	6	39	1.42
422758--422799	23	1.9	21	85	9	57	59	0	0	40	0.97
422822--422854	13	2.5	14	90	9	52	66	0	0	33	0.92
423369--423419	16	3.3	16	76	15	54	41	0	1	56	1.10
425853--425903	19	2.6	21	79	17	65	45	0	1	52	1.12
425849--426146	122	2.5	124	81	12	322	42	1	2	53	1.25
426246--426285	21	1.9	21	85	10	55	35	0	0	65	0.93
426320--426366	22	2.1	22	88	7	69	61	0	2	36	1.08
426299--426367	22	3.2	21	75	20	63	60	1	1	36	1.14
426848--426876	14	2.0	15	93	6	51	58	6	0	34	1.25
427395--427535	6	21.9	7	64	22	60	43	0	1	54	1.14
427397--427534	9	15.0	10	66	20	54	44	0	1	53	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427394--427522	35	3.6	34	70	17	100	41	0	1	55	1.14
427399--427475	20	3.9	19	80	11	68	46	0	1	51	1.09
427504--427535	13	2.5	13	94	0	55	46	0	0	53	1.00
427807--427838	16	2.1	15	94	5	55	37	3	12	46	1.57
435792--435826	17	2.1	17	94	0	61	60	25	0	14	1.35
436224--436249	12	2.2	12	100	0	52	30	34	15	19	1.93
437148--437435	153	1.9	153	80	2	337	39	17	16	26	1.90
439824--440011	67	2.8	65	78	5	205	49	13	19	18	1.79
439829--440297	131	3.5	132	79	6	321	45	12	21	20	1.84
439984--440367	66	5.8	65	84	4	443	44	12	21	21	1.85
439984--440085	32	3.1	34	71	23	108	45	10	22	21	1.83
439977--440367	131	3.0	131	82	5	477	43	12	21	21	1.86
440320--440415	48	2.0	47	85	2	129	50	11	16	21	1.77
440191--440547	180	2.0	179	84	3	468	45	13	20	20	1.84
440372--440556	66	2.8	66	80	3	219	45	10	21	22	1.82
441057--441481	76	5.7	75	76	6	328	44	12	15	28	1.82
441057--441433	152	2.5	151	84	6	428	44	10	16	28	1.82
444027--444080	21	2.5	22	96	3	101	61	9	11	18	1.55
444993--445067	20	3.8	20	80	3	80	40	12	13	34	1.81
444990--445067	40	2.0	39	87	2	111	39	12	12	34	1.82
445593--446738	143	8.0	144	90	2	1618	22	16	32	28	1.96
445593--446738	29	39.9	29	88	3	1639	22	16	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447967--448018	1	52.0	1	76	0	50	0	1	9	88	0.59
447957--448015	10	5.6	10	82	9	64	1	3	10	84	0.80
447957--448016	27	2.2	27	85	11	79	1	3	10	85	0.79
447974--448018	19	2.4	19	85	10	65	0	0	11	88	0.50
447967--448016	22	2.3	21	86	10	73	0	2	10	88	0.61
447967--448018	15	3.5	15	87	7	72	0	1	9	88	0.59
461070--461124	22	2.5	22	100	0	110	61	9	10	18	1.54
462038--462112	20	3.8	20	80	3	80	40	12	13	34	1.81
462035--462112	40	2.0	39	87	2	111	39	12	12	34	1.82
462359--462546	60	3.1	60	77	11	215	45	20	16	17	1.85

Tables:   1   2   3   4   5   6   7