genome.fa.s185.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold185
Parameters: 2 7 7 80 10 50 1000
Length:  1073966

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 836 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462983--463389	88	4.7	88	81	4	398	45	14	15	24	1.84
463619--464072	112	3.9	112	74	11	369	36	9	15	37	1.81
465647--465701	20	2.8	20	97	2	103	34	20	10	34	1.87
469894--469986	47	2.0	47	100	0	186	59	4	17	19	1.54
471518--471926	154	2.7	154	82	2	473	42	17	15	24	1.89
472387--472446	31	1.9	31	89	0	93	50	16	8	25	1.73
473552--473609	6	9.7	6	78	14	57	67	0	3	29	1.07
473553--473602	25	2.0	25	92	0	82	70	0	2	28	0.99
474945--475023	33	2.5	30	77	16	79	59	0	0	40	0.97
475004--475072	17	4.0	17	73	14	61	46	2	10	40	1.53
478905--479021	51	2.3	51	87	0	162	36	11	23	27	1.90
479108--479221	50	2.3	51	96	1	212	35	10	26	28	1.89
479209--479277	28	2.4	29	85	7	97	31	14	27	26	1.95
479236--479473	81	3.0	78	77	6	262	33	10	26	29	1.90
481035--481090	16	3.5	16	73	9	51	7	8	33	50	1.61
481070--481129	16	3.8	16	72	0	57	18	13	26	41	1.87
481266--481307	19	2.2	19	83	8	50	33	0	0	66	0.92
481334--481371	18	2.1	18	90	0	58	50	0	2	47	1.15
482020--482049	16	1.9	15	93	6	51	26	16	3	53	1.59
482551--482607	16	3.6	16	80	0	69	10	15	29	43	1.80
483017--483064	20	2.3	20	75	3	51	66	0	0	33	0.92
483010--483082	15	3.9	19	74	18	64	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483478--483516	4	9.5	4	83	5	51	25	0	5	69	1.09
483512--483588	25	3.3	23	71	10	66	54	2	1	41	1.22
483678--483714	16	2.3	17	86	9	51	54	0	5	40	1.24
484320--484373	20	2.6	21	91	2	83	40	11	16	31	1.84
486889--487154	79	3.4	79	80	3	284	30	24	9	36	1.86
486889--487236	158	2.2	158	86	3	468	29	25	9	35	1.88
486967--487219	79	3.2	78	78	6	296	29	26	9	34	1.88
488459--488484	13	2.0	13	100	0	52	38	15	15	30	1.88
488441--488504	32	2.0	33	87	3	94	39	17	14	29	1.88
488938--489004	37	1.9	35	88	11	102	32	11	25	29	1.92
490096--490137	21	2.0	21	85	0	57	42	4	28	23	1.74
490523--490683	84	1.9	84	80	9	186	53	3	17	25	1.60
492170--492219	20	2.5	20	100	0	100	30	20	14	36	1.91
492236--492260	13	1.9	13	100	0	50	36	16	16	32	1.90
494060--494085	13	2.0	13	100	0	52	38	15	15	30	1.88
494042--494105	32	2.0	33	90	3	103	39	18	14	28	1.90
494545--494611	37	1.9	35	85	11	93	32	10	25	31	1.89
499941--500014	20	3.7	20	76	5	60	41	10	14	32	1.81
505648--506849	612	2.0	612	94	0	2138	33	15	16	33	1.91
507982--508068	31	2.9	31	73	19	76	41	2	1	55	1.20
509112--509146	16	2.2	16	89	0	52	2	2	34	60	1.26
512104--512164	24	2.5	23	74	10	59	40	1	1	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512730--512778	24	2.0	26	84	15	68	32	0	8	59	1.27
515783--515808	2	13.0	2	100	0	52	50	0	0	50	1.00
517858--517888	13	2.4	13	94	0	53	32	3	6	58	1.40
518359--518394	2	18.5	2	94	5	65	50	0	0	50	1.00
518447--518477	16	2.0	16	93	6	55	64	0	0	35	0.94
518610--518657	18	2.8	17	76	17	55	64	2	0	33	1.05
518622--518668	20	2.5	20	79	6	53	61	2	0	36	1.08
520211--520257	21	2.2	21	100	0	94	48	4	4	42	1.42
520650--520686	2	19.5	2	86	10	51	51	0	0	48	1.00
521482--521540	17	3.6	17	70	25	63	45	0	3	50	1.18
521482--521542	32	1.9	32	93	0	104	47	0	3	49	1.18
522254--522420	77	2.2	77	83	3	201	41	4	8	44	1.57
530191--530671	156	3.1	157	82	5	559	39	21	17	21	1.93
530890--531177	156	1.9	155	81	3	355	36	19	18	25	1.94
531277--531563	157	1.8	157	87	1	432	42	13	14	29	1.85
531404--531794	193	2.0	195	80	5	441	40	14	12	32	1.84
533648--533701	20	2.7	21	80	8	67	29	16	9	44	1.79
535946--536188	79	3.1	79	85	3	328	25	20	15	38	1.92
536000--536229	79	2.9	78	85	5	207	27	22	14	35	1.93
542129--542167	18	2.2	17	86	4	51	56	0	2	41	1.13
731768--731830	1	63.0	1	96	0	117	0	98	1	0	0.12
735091--735152	21	3.0	21	85	4	72	33	27	6	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735792--735863	30	2.4	30	95	0	126	29	18	15	37	1.91
735901--735955	20	2.8	20	94	0	101	30	18	9	41	1.81
735824--735935	50	2.2	50	84	9	149	28	18	11	41	1.86
740074--740202	52	2.5	52	96	0	240	27	19	18	34	1.95
740211--740235	13	1.9	13	100	0	50	36	16	16	32	1.90
740278--740375	19	5.8	18	71	28	90	36	17	12	33	1.87
740297--740353	13	3.9	13	76	24	60	33	17	14	35	1.90
740276--740373	32	3.0	32	96	1	178	35	17	12	34	1.87
741095--741221	67	1.9	68	86	1	184	38	12	25	23	1.90
741171--741725	49	11.6	52	78	13	244	32	17	24	25	1.96
741278--741649	141	2.7	141	90	3	569	32	17	25	25	1.97
741512--741579	21	3.2	21	62	25	52	27	17	27	26	1.98
741234--741738	233	2.2	235	92	1	836	31	17	24	25	1.97
741279--741743	92	5.0	93	91	4	546	31	17	25	25	1.97
741278--741725	141	3.2	136	86	8	543	31	17	25	25	1.97
741738--741939	33	6.2	33	89	4	313	20	17	34	27	1.95
741942--742168	34	6.8	33	76	8	199	36	12	30	20	1.90
741940--742168	67	3.4	67	87	2	318	35	12	31	20	1.90
741941--742158	33	6.5	34	80	7	223	35	12	30	21	1.90
742391--742588	33	6.1	33	89	3	303	20	17	33	28	1.95
742589--742777	67	2.8	68	88	1	272	35	12	31	20	1.89
742590--742775	34	5.5	34	77	6	182	36	11	30	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
741777--743645	617	2.9	625	93	5	3162	30	15	27	26	1.96
743008--743205	33	6.1	33	90	3	312	19	17	34	28	1.95
743208--743434	34	6.8	33	77	8	208	35	12	30	20	1.90
743206--743434	67	3.4	67	86	2	309	35	12	31	20	1.90
743206--743424	33	6.5	34	83	6	243	35	12	31	21	1.90
745800--746200	79	5.2	77	75	13	301	28	23	11	35	1.90
745917--746132	69	3.0	69	78	12	202	28	25	10	35	1.89
745855--746131	148	1.9	149	87	3	407	29	23	11	36	1.89
758850--759383	61	8.8	61	82	5	539	26	26	17	29	1.97
758856--759383	183	2.9	182	81	7	599	26	26	17	29	1.98
759959--760101	30	5.4	29	63	30	88	24	15	16	43	1.87
759937--760116	50	3.6	50	90	4	283	25	16	15	42	1.87
759937--760116	100	1.8	100	93	0	315	25	16	15	42	1.87
762472--762840	78	4.7	79	79	5	345	27	22	12	37	1.90
762491--762832	156	2.2	156	82	3	420	27	23	12	35	1.91
762584--762887	78	3.9	79	80	3	206	28	22	12	36	1.91
762491--762889	156	2.5	155	78	4	397	27	22	12	37	1.91
764121--764188	24	3.0	22	70	16	59	19	0	29	51	1.47
766408--766559	67	2.3	66	82	6	173	25	17	22	34	1.96
766875--766938	27	2.3	28	81	10	78	51	6	3	39	1.43
767341--767388	4	12.2	4	79	20	57	77	0	2	20	0.88
771108--771160	23	2.3	23	90	0	79	56	3	0	39	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
771726--771820	32	2.9	32	80	9	104	30	0	7	62	1.23
771691--771826	16	8.6	15	74	10	85	33	0	5	60	1.21
771727--771819	48	1.9	48	82	4	116	30	0	7	62	1.23
772109--772164	26	2.1	27	87	9	80	66	0	0	33	0.92
773783--773914	22	6.0	21	70	18	72	33	0	0	65	0.98
773784--773916	44	3.0	43	70	19	112	33	0	0	65	0.98
773807--773853	16	2.9	17	81	9	53	34	0	0	65	0.93
773804--773950	35	4.2	34	71	18	97	37	0	0	61	1.01
773864--773912	11	4.5	11	76	0	53	38	0	0	61	0.96
774099--774139	17	2.4	17	81	18	50	51	0	2	46	1.14

Tables:   1   2   3   4   5   6   7