genome.fa.s185.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold185
Parameters: 2 7 7 80 10 50 1000
Length:  1073966

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 836 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
933926--933993	20	3.3	20	78	9	75	27	19	17	35	1.94
933956--934002	20	2.3	20	85	0	58	36	19	12	31	1.89
937397--937426	8	3.6	8	95	4	51	80	0	10	10	0.92
937396--937426	9	3.6	9	91	8	55	80	0	9	9	0.90
944773--944831	19	3.0	20	87	7	84	33	11	15	38	1.84
944817--944843	13	2.1	13	100	0	54	40	14	14	29	1.86
944798--944862	32	2.0	33	90	3	105	41	13	15	29	1.86
947342--947389	20	2.3	21	85	7	80	27	16	10	45	1.80
947692--947748	13	3.9	13	76	24	60	35	14	15	35	1.88
947670--947767	19	5.7	19	71	27	94	33	12	16	37	1.86
947672--947772	32	3.1	32	97	1	184	34	11	16	36	1.86
947789--947813	13	1.9	13	100	0	50	32	16	16	36	1.90
947822--947950	52	2.5	52	96	0	240	34	17	18	28	1.94
952112--952178	33	2.0	33	88	0	98	34	11	13	40	1.81
952132--952156	13	1.9	13	100	0	50	36	16	16	32	1.90
952219--952294	13	5.9	13	71	27	56	32	18	13	35	1.89
952200--952302	51	2.0	51	100	0	206	33	19	11	35	1.88
952283--952426	52	2.8	49	85	10	182	33	18	17	30	1.94
952303--952426	52	2.4	52	93	4	207	34	18	17	29	1.94
955356--955682	163	2.0	163	93	0	555	25	27	20	25	1.99
959488--959538	15	3.5	14	86	5	66	84	15	0	0	0.63
959489--959538	14	3.6	13	86	10	64	84	16	0	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
960844--961124	66	4.1	69	79	8	297	19	32	13	35	1.90
960842--961124	34	8.3	34	78	7	261	19	32	13	35	1.90
960842--961134	102	2.9	103	80	7	346	19	32	12	35	1.90
960812--961134	34	9.6	34	77	10	256	20	32	13	34	1.90
960842--961167	68	4.8	69	77	9	206	19	31	12	35	1.90
961149--961317	32	5.2	33	89	3	256	28	34	17	20	1.95
961324--962159	52	16.9	49	77	12	707	25	23	16	34	1.95
961363--961740	43	8.1	43	79	10	324	25	23	17	33	1.96
961324--962159	92	8.5	92	83	9	828	25	23	16	34	1.95
961691--962159	107	4.6	103	85	8	541	24	24	15	35	1.95
961798--962157	200	1.8	197	86	3	524	23	25	16	34	1.95
963024--963080	13	3.9	13	72	24	51	35	12	17	35	1.87
963004--963104	32	3.1	32	92	1	166	34	9	17	37	1.83
963002--963099	19	5.8	18	68	28	72	33	10	17	38	1.83
963142--963166	13	1.9	13	100	0	50	32	16	16	36	1.90
963155--963326	52	3.3	51	89	6	256	33	19	18	29	1.95
963175--963333	52	3.1	52	96	0	282	35	18	18	27	1.94
963332--963380	16	3.1	16	82	5	73	32	12	8	46	1.71
963332--963373	15	2.7	16	85	7	59	30	11	7	50	1.66
966629--966744	36	3.2	36	76	3	108	23	24	6	45	1.77
968328--968380	13	4.5	13	69	26	55	35	16	13	33	1.88
968331--968395	33	2.0	33	90	6	105	33	18	13	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968425--968462	20	1.9	19	94	5	67	28	18	15	36	1.92
969752--969786	19	1.9	18	88	11	54	28	0	20	51	1.47
975357--975637	41	6.9	41	76	4	201	40	13	24	20	1.89
975376--975632	82	3.2	80	80	5	259	40	13	24	21	1.89
975708--976005	41	7.3	41	69	11	164	46	13	20	19	1.83
975969--976192	41	5.5	41	75	1	189	44	12	25	17	1.84
976073--976184	40	2.8	41	81	2	118	44	13	25	16	1.84
975765--976202	41	10.7	41	71	6	176	46	13	22	18	1.83
975882--976204	123	2.6	123	74	3	310	46	12	22	17	1.82
975882--976225	122	2.8	123	72	3	325	46	13	22	17	1.82
976262--976423	41	4.0	40	79	6	139	41	12	25	20	1.88
976288--976439	82	1.9	82	81	2	189	40	15	25	18	1.89
976569--977167	41	14.9	41	71	9	232	41	15	24	18	1.89
976569--977097	82	6.6	82	72	10	288	42	15	23	18	1.88
976788--977147	82	4.4	80	77	4	272	39	15	25	19	1.91
977219--977407	64	2.9	65	73	12	172	42	12	23	21	1.87
979596--979691	41	2.3	41	79	10	115	7	11	6	75	1.19
984118--984330	98	2.2	95	82	5	250	36	12	20	30	1.90
997031--997087	1	57.0	1	78	0	51	87	5	7	0	0.66
997031--997087	16	3.6	16	74	9	62	87	5	7	0	0.66
997029--997084	27	2.0	29	93	6	98	83	5	10	0	0.78
997029--997088	29	2.0	29	90	3	93	83	5	11	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
999655--999680	13	2.0	13	100	0	52	46	0	7	46	1.31
1000556--1000598	20	2.1	21	86	4	61	32	6	2	58	1.38
1003413--1003612	39	5.1	38	61	16	86	41	11	13	34	1.80
1003328--1003643	78	4.1	78	79	6	304	40	12	14	32	1.83
1003575--1003769	79	2.5	79	80	3	198	42	12	14	30	1.82
1003403--1003709	156	2.0	155	80	6	352	41	12	13	32	1.81
1003600--1003810	79	2.7	78	78	7	203	40	13	14	31	1.85
1003850--1003904	28	2.0	28	82	7	67	38	21	16	23	1.93
1005340--1005374	2	17.5	2	100	0	70	48	0	0	51	1.00
1008745--1008777	2	16.5	2	100	0	66	51	0	0	48	1.00
1012476--1012552	29	2.7	29	91	4	120	12	20	15	50	1.77
1012536--1012603	25	2.7	25	93	4	111	19	23	11	45	1.83
1013033--1013077	21	2.1	21	88	8	65	31	2	0	66	1.04
1016458--1016482	13	1.9	13	100	0	50	36	16	16	32	1.90
1016527--1016578	13	3.5	13	73	26	50	36	17	13	32	1.89
1016535--1016599	19	3.7	19	75	23	79	38	16	12	32	1.86
1016527--1016597	32	2.2	32	97	0	133	36	18	12	32	1.88
1022857--1022913	6	9.8	6	73	19	50	80	0	17	1	0.79
1022878--1022913	17	2.1	17	89	0	54	83	0	16	0	0.65
1030727--1031632	27	33.0	27	89	3	1328	23	33	14	28	1.93
1030727--1031632	55	16.5	54	89	3	1328	23	33	14	28	1.93
1030727--1031641	137	6.7	137	92	2	1394	23	33	14	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1031615--1032600	32	30.8	32	93	1	1638	31	33	18	16	1.94
1033835--1033884	14	3.4	15	78	18	52	76	0	22	2	0.89
1033831--1033884	20	2.7	20	79	2	63	77	0	20	1	0.86
1033858--1033887	10	3.0	10	95	0	51	86	0	13	0	0.57
1033832--1033886	17	3.3	16	75	7	56	78	0	20	1	0.85
1039787--1040048	42	6.2	43	79	4	187	35	18	26	18	1.94
1039815--1040091	42	6.5	43	79	2	184	34	18	26	19	1.95
1039957--1040187	42	5.5	41	76	6	194	35	19	28	16	1.94
1039821--1040190	126	2.9	125	79	5	334	34	18	27	19	1.95
1039817--1040187	84	4.4	84	77	5	221	35	18	27	18	1.95
1039949--1040227	126	2.2	126	80	6	307	34	19	27	17	1.95
1054692--1054751	29	2.1	29	84	6	77	13	18	20	48	1.81
1054769--1054836	25	2.7	25	84	4	93	22	25	8	44	1.81
1054943--1055054	59	1.9	58	83	8	147	35	13	22	28	1.92
1055097--1055125	12	2.3	13	94	5	51	37	17	24	20	1.93
1055278--1055335	6	9.7	6	81	7	55	22	1	1	74	1.01
1056256--1056312	21	2.7	21	89	8	89	31	12	21	35	1.90
1056368--1056435	19	3.9	19	78	21	85	35	11	14	38	1.83
1056389--1056413	13	1.9	13	100	0	50	36	16	16	32	1.90
1056370--1056432	32	2.0	32	96	0	117	34	12	15	36	1.86
1056455--1056509	20	2.8	20	82	0	74	23	14	16	45	1.84
1058969--1059138	52	3.3	51	79	12	186	29	24	12	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1059122--1059198	28	2.8	28	87	0	100	23	33	19	23	1.97
1059232--1059285	28	1.9	28	88	7	83	24	27	16	31	1.96
1059152--1059353	76	2.6	78	81	5	223	25	30	16	27	1.96
1071763--1071804	1	42.0	1	85	0	57	92	4	2	0	0.44
1072795--1073580	55	14.3	54	91	4	1145	28	30	20	20	1.98
1073417--1073509	29	3.3	29	64	17	70	27	32	18	21	1.97

Tables:   1   2   3   4   5   6   7

The End!