Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold19
Parameters: 2 7 7 80 10 50 1000
Length:  2266706

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1733 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2205819--2205859
8
5.1
8
82
11
57
87
12
0
0
0.53
2205821--2205869
12
4.2
11
82
12
62
87
10
0
2
0.62
2205821--2205869
22
2.1
22
88
7
71
87
10
0
2
0.62
2205819--2205860
10
4.0
10
84
9
57
88
11
0
0
0.53
2205822--2205869
7
6.7
7
84
13
62
87
10
0
2
0.62
2205829--2205869
10
4.3
10
84
9
50
87
9
0
2
0.62
2205819--2205869
15
3.5
15
78
5
59
86
11
0
1
0.66
2207388--2207531
61
2.3
61
86
3
191
26
36
9
27
1.88
2207388--2207572
61
3.0
60
79
9
185
23
35
11
29
1.91
2207542--2207638
27
3.6
27
90
0
149
22
30
15
30
1.95
2207679--2207882
52
3.9
53
80
4
191
25
26
15
32
1.95
2207687--2208027
104
3.3
104
73
3
299
25
25
14
35
1.93
2207993--2208124
61
2.1
62
83
6
162
26
25
11
37
1.90
2213523--2213556
13
2.6
13
90
0
50
44
17
8
29
1.79
2213585--2213656
20
3.7
20
81
3
74
41
16
13
27
1.87
2213643--2213695
20
2.7
20
96
0
97
28
15
20
35
1.93
2214651--2214692
18
2.3
18
84
12
50
7
11
14
66
1.43
2219458--2219513
22
2.6
21
80
2
67
26
1
8
62
1.35
2219552--2219585
16
2.1
15
89
10
50
29
2
0
67
1.05
2219668--2219717
26
2.0
24
88
7
73
50
4
2
44
1.32
2227255--2227281
13
2.1
13
100
0
54
29
14
14
40
1.86
2227265--2227321
19
2.9
19
78
2
69
31
17
15
35
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2227350--2227403
20
2.7
20
88
5
74
35
14
14
35
1.88
2229704--2229746
12
3.5
12
84
9
52
20
0
2
76
0.89
2229702--2229748
13
3.5
13
75
13
51
21
0
2
76
0.89
2230670--2230760
31
2.9
31
85
3
103
26
18
37
17
1.93
2231303--2231368
31
2.1
31
94
0
114
16
27
19
36
1.93
2231415--2231468
9
5.7
9
76
10
54
20
1
0
77
0.86
2231424--2231468
19
2.3
20
84
3
56
22
2
0
75
0.91
2234730--2235014
79
3.6
80
80
3
288
34
11
23
30
1.91
2234975--2235082
51
2.1
51
82
3
128
36
9
23
31
1.86
2234888--2235145
130
2.0
130
84
1
338
34
11
24
29
1.90
2237480--2237576
30
3.5
30
67
27
97
42
15
17
24
1.88
2237466--2237596
50
2.6
49
86
4
199
41
14
17
26
1.88
2243036--2243060
2
12.5
2
100
0
50
48
0
0
52
1.00
2244568--2244621
24
2.2
24
100
0
108
12
18
12
55
1.69
2244268--2244971
353
2.0
353
100
0
1408
26
17
18
37
1.93
2244921--2244971
24
2.1
24
100
0
102
11
19
11
56
1.65
2245375--2245427
19
2.7
20
79
8
63
15
18
0
66
1.26
2245553--2245605
18
2.9
17
81
13
61
13
7
1
77
1.06
2245696--2245737
9
4.8
9
91
2
59
7
0
2
90
0.53
2245918--2245945
2
14.0
2
100
0
56
50
0
0
50
1.00
2247746--2247784
16
2.4
16
86
4
51
41
7
2
48
1.45
2248115--2248161
3
15.7
3
100
0
94
31
0
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2248280--2248320
19
2.2
19
86
0
55
56
0
2
41
1.13
2248924--2248956
13
2.3
15
90
10
52
42
0
0
57
0.98
2248935--2248993
24
2.6
22
78
17
66
37
0
0
62
0.95
2249043--2249094
2
26.0
2
100
0
104
50
0
0
50
1.00
2254011--2254067
13
3.9
13
76
24
60
35
14
17
33
1.90
2253991--2254088
32
3.0
32
96
1
178
34
12
17
35
1.87
2253989--2254086
19
5.8
18
71
28
90
33
12
17
36
1.87
2265223--2265313
1
91.0
1
77
0
83
87
5
6
0
0.65
2265224--2265313
34
2.7
34
93
5
148
87
5
6
0
0.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!