genome.fa.s19.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold19
Parameters: 2 7 7 80 10 50 1000
Length:  2266706

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  8  of  15  ( 1733 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1017391--1017440	16	3.1	17	78	21	63	56	0	0	44	0.99
1017367--1017466	46	2.1	48	81	5	114	55	0	2	43	1.11
1017402--1017468	21	2.7	27	68	29	67	56	0	0	43	0.99
1018187--1018248	18	3.3	18	80	12	79	50	12	1	35	1.51
1018192--1018266	19	3.9	19	82	8	89	50	10	1	37	1.46
1018133--1018325	96	2.0	96	81	7	221	48	13	3	34	1.58
1018605--1018681	20	3.8	20	79	8	75	54	9	2	33	1.46
1018977--1019039	21	3.2	20	86	6	83	49	11	0	39	1.38
1018786--1019050	77	3.5	76	77	7	241	47	12	3	36	1.59
1018986--1019040	19	2.8	20	86	8	76	49	10	0	40	1.38
1019237--1019295	20	3.0	20	76	0	64	47	13	3	35	1.60
1019088--1019262	77	2.3	74	76	6	172	48	12	3	36	1.57
1019258--1019314	19	2.9	19	74	7	53	47	8	3	40	1.52
1019238--1019318	40	2.0	40	85	2	110	48	12	2	37	1.54
1020139--1020178	16	2.5	17	84	11	50	37	0	0	62	0.95
1021510--1021540	2	16.0	2	93	6	55	51	0	0	48	1.00
1021647--1021690	22	2.0	22	86	4	61	50	4	0	45	1.22
1021679--1021707	15	2.0	15	93	6	51	51	6	0	41	1.28
1021977--1022007	16	1.9	16	93	0	53	83	0	16	0	0.64
1022396--1022432	16	2.3	16	95	0	65	35	2	0	62	1.10
1030518--1030551	2	17.0	2	93	0	59	50	2	0	47	1.16
1031186--1031230	20	2.3	21	88	11	69	28	0	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1031195--1031235	11	3.5	11	87	9	55	24	0	0	75	0.80
1031190--1031243	15	3.4	17	70	17	53	29	0	0	70	0.88
1031816--1031854	6	6.5	6	100	0	78	33	15	0	51	1.44
1035272--1035302	13	2.4	13	88	0	53	74	3	6	16	1.16
1035521--1035616	25	3.9	25	72	14	83	48	3	1	46	1.24
1035525--1035621	12	8.0	12	70	17	58	48	3	1	47	1.24
1035605--1035698	15	6.1	15	71	15	59	57	1	1	40	1.13
1035674--1035713	18	2.1	19	86	9	55	57	0	5	37	1.21
1037497--1037536	22	1.9	21	85	10	55	37	0	2	60	1.11
1037555--1037621	21	3.1	21	80	4	80	35	0	0	64	0.94
1037566--1037607	11	3.9	11	87	12	61	28	0	0	71	0.86
1037555--1037609	11	5.2	11	77	18	55	32	0	0	67	0.91
1037888--1037967	29	2.8	29	77	5	83	48	0	2	48	1.14
1038004--1038069	19	3.7	18	75	13	57	48	1	0	50	1.10
1039282--1039340	32	1.9	31	86	6	84	40	0	0	59	0.97
1041749--1041776	6	4.7	6	100	0	56	85	0	14	0	0.59
1044612--1044640	14	2.0	15	93	6	51	51	0	0	48	1.00
1044721--1044770	11	4.6	11	76	14	50	0	26	0	74	0.83
1044723--1044769	16	2.9	16	78	12	51	0	23	0	76	0.78
1044706--1044769	28	2.3	29	81	10	80	1	25	0	73	0.92
1044706--1044770	15	4.6	14	78	12	71	1	26	0	72	0.94
1045677--1045703	12	2.2	12	100	0	54	59	18	14	7	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1046548--1046595	18	2.7	18	86	0	69	77	2	0	20	0.88
1046720--1046767	11	4.4	11	84	10	62	52	4	0	43	1.20
1046724--1046764	21	1.9	21	90	5	64	53	4	0	41	1.22
1046752--1046797	22	2.2	21	84	7	58	43	4	6	45	1.49
1047103--1047138	2	18.5	2	94	5	65	47	0	0	52	1.00
1047193--1047232	16	2.4	17	79	8	55	60	0	0	40	0.97
1047186--1047228	21	2.0	22	86	13	63	60	0	0	39	0.97
1047680--1047784	20	4.7	20	68	22	75	28	15	13	42	1.84
1048619--1049223	302	2.0	302	100	0	1210	30	15	14	39	1.88
1052290--1052333	22	2.0	23	81	4	54	11	9	11	68	1.40
1064733--1064807	20	3.8	20	80	3	80	40	12	13	34	1.81
1064730--1064807	40	2.0	39	87	2	111	39	12	12	34	1.82
1065339--1066134	28	27.7	29	87	4	1057	22	17	31	28	1.97
1067363--1067420	1	58.0	1	78	0	62	3	1	5	89	0.63
1067353--1067421	19	3.3	20	83	15	79	4	2	7	85	0.81
1073430--1073455	13	2.0	13	100	0	52	38	15	15	30	1.88
1075672--1075716	21	2.1	21	84	8	56	53	4	20	22	1.63
1077520--1077550	15	2.1	15	93	0	53	48	16	22	12	1.80
1079628--1079653	13	2.0	13	100	0	52	30	15	15	38	1.88
1082204--1082229	13	2.0	13	100	0	52	38	15	15	30	1.88
1091351--1091425	20	3.8	20	80	3	80	40	12	13	34	1.81
1091348--1091425	40	2.0	39	87	2	111	39	12	12	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1092101--1092191	1	91.0	1	75	0	56	84	13	1	1	0.73
1092102--1092180	22	3.7	21	82	14	90	84	12	1	1	0.74
1092101--1092191	35	2.6	35	79	10	114	84	13	1	1	0.73
1093435--1093534	28	3.6	28	87	0	146	28	29	17	26	1.97
1093441--1094048	56	10.4	56	81	9	644	29	31	17	22	1.96
1093497--1093572	38	2.0	38	94	0	134	28	31	15	23	1.96
1093535--1094048	28	17.8	28	84	6	600	29	31	17	21	1.96
1094024--1094073	25	2.0	25	92	0	82	32	24	20	24	1.98
1094184--1094315	48	2.8	48	91	0	219	19	28	18	33	1.96
1095051--1095104	20	2.8	19	86	5	72	33	14	14	37	1.88
1095579--1095607	13	2.1	14	93	6	51	72	20	0	6	1.07
1102763--1102839	31	2.5	31	95	0	136	45	11	19	23	1.83
1107207--1107392	52	3.6	52	83	5	209	41	12	13	32	1.82
1107449--1107502	20	2.6	21	85	2	74	31	18	9	40	1.82
1110012--1110232	51	4.3	51	85	4	264	32	12	25	30	1.92
1110215--1110293	27	2.9	28	76	3	79	20	16	36	26	1.93
1110165--1110360	103	1.9	105	86	3	279	28	14	30	27	1.95
1110164--1110651	182	2.7	182	71	10	456	29	13	28	27	1.95
1110350--1110470	51	2.4	51	88	2	172	30	12	27	29	1.93
1110383--1110493	51	2.2	51	85	3	152	35	8	25	31	1.85
1110452--1110627	79	2.2	80	84	3	221	30	13	27	28	1.94
1110672--1110810	51	2.7	51	90	4	226	38	7	19	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1113202--1113243	21	2.0	21	100	0	84	28	19	9	42	1.82
1113280--1113343	32	2.0	31	93	3	110	35	17	10	35	1.85
1113280--1113335	19	3.3	19	67	27	61	37	17	10	33	1.85
1113285--1113340	16	3.5	16	69	26	55	33	17	10	37	1.85
1113323--1113366	21	2.0	22	91	4	72	36	11	15	36	1.84
1117791--1117848	20	3.0	20	84	2	73	29	10	13	46	1.77
1117887--1117911	13	1.9	13	100	0	50	32	16	16	36	1.90
1117900--1118048	52	2.9	52	90	2	228	33	17	17	31	1.93
1123319--1123360	17	2.7	15	82	13	50	42	9	0	47	1.36
1124330--1124587	130	2.0	130	81	6	299	31	24	9	34	1.87
1124441--1125025	79	7.4	79	76	5	414	29	24	11	33	1.91
1124441--1125007	237	2.4	236	80	8	614	29	25	12	33	1.92
1126280--1126361	21	4.1	20	85	6	112	37	17	12	32	1.86
1126280--1126361	41	2.0	40	88	6	121	37	17	12	32	1.86
1126397--1126464	19	3.9	19	78	21	85	35	11	14	38	1.83
1126399--1126461	32	2.0	32	96	0	117	34	12	15	36	1.86
1126418--1126442	13	1.9	13	100	0	50	36	16	16	32	1.90
1126504--1126529	13	2.0	13	100	0	52	30	15	15	38	1.88
1126484--1126550	33	2.0	33	88	0	98	25	14	16	43	1.86
1128995--1129065	27	2.6	27	86	6	90	23	33	21	21	1.97
1129050--1129220	51	3.3	50	78	6	180	29	25	11	33	1.91
1128883--1129220	105	3.2	104	69	13	269	29	26	11	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1129203--1129284	28	2.9	28	82	7	96	24	31	17	26	1.97
1134344--1134392	23	2.1	23	96	0	89	42	24	8	24	1.81
1142530--1143103	61	9.4	60	84	4	634	26	25	17	30	1.97
1143685--1143797	49	2.3	51	90	3	176	28	15	13	42	1.85
1146076--1146781	79	9.0	78	77	9	404	28	23	12	35	1.92
1146076--1146779	158	4.5	158	75	10	518	28	23	12	35	1.92
1146566--1146807	79	3.1	79	80	5	224	28	23	10	37	1.88
1146980--1147020	20	2.0	20	100	0	82	51	14	9	24	1.72
1148217--1148255	20	2.0	20	85	10	53	51	15	10	23	1.73
1149059--1149136	32	2.4	32	93	0	138	34	14	16	34	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15