genome.fa.s205.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold205
Parameters: 2 7 7 80 10 50 1000
Length:  1179939

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 838 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327951--327992	16	2.5	17	88	7	68	7	9	11	71	1.31
328028--328052	13	1.9	13	100	0	50	0	16	0	84	0.63
328740--328836	28	3.2	29	74	22	85	26	0	2	71	0.97
328770--328823	24	2.3	23	75	15	56	27	0	1	70	0.98
331173--331221	20	2.4	21	83	10	66	30	22	12	34	1.91
331250--331333	19	4.7	19	70	18	72	39	14	15	30	1.87
333611--333657	20	2.3	20	85	0	58	42	2	19	36	1.63
333855--334133	140	2.0	140	97	0	531	46	18	5	28	1.72
335208--335258	20	2.6	20	87	3	68	23	13	19	43	1.87
335310--335365	20	2.8	20	88	0	76	30	16	16	37	1.90
337792--337830	13	3.0	13	92	0	60	35	12	17	33	1.88
344010--344035	13	2.0	13	100	0	52	30	15	15	38	1.88
343990--344053	33	2.0	32	87	3	92	26	14	15	43	1.85
348303--348335	12	2.8	12	100	0	66	24	27	0	48	1.51
351470--351586	57	2.1	56	82	7	139	29	19	9	41	1.83
351571--351673	28	3.6	28	81	3	118	35	16	8	38	1.80
352354--352482	19	7.8	18	71	28	117	33	12	17	36	1.88
352375--352463	13	5.9	13	72	27	70	34	13	17	33	1.89
352356--352490	32	4.2	32	99	0	261	33	12	18	35	1.89
352535--352559	13	1.9	13	100	0	50	32	16	16	36	1.90
352568--352696	52	2.5	52	96	0	240	34	18	17	28	1.94
356629--356864	98	2.4	97	84	6	316	29	21	12	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357248--357287	21	1.9	21	85	10	55	42	12	7	37	1.71
362462--362492	12	2.7	12	95	5	55	83	16	0	0	0.64
377441--377475	12	3.1	12	92	8	56	88	11	0	0	0.51
377441--377481	17	2.4	16	84	11	55	87	9	2	0	0.62
378465--379192	58	12.3	61	75	17	423	26	26	19	27	1.99
378465--378788	178	1.8	178	80	9	399	26	26	18	28	1.98
378616--379504	54	15.9	54	75	16	439	27	27	20	24	1.99
378553--379504	120	8.4	114	76	15	474	27	27	20	24	1.99
378465--379192	54	12.4	62	76	17	432	26	26	19	27	1.99
379087--379504	55	7.9	55	81	11	429	30	28	20	20	1.98
379177--379373	47	4.0	47	85	14	281	31	29	20	17	1.96
379119--379373	101	2.5	95	83	15	295	30	29	20	19	1.97
380932--380965	14	2.6	13	86	13	52	79	20	0	0	0.73
382728--382855	53	2.5	52	80	10	147	34	24	11	29	1.91
382839--382912	27	2.8	26	86	12	98	22	36	20	20	1.95
382978--383116	52	2.6	53	78	15	153	30	23	11	34	1.90
388653--389382	71	10.2	73	72	14	291	29	25	14	30	1.95
388652--389453	72	11.3	74	72	11	389	29	25	14	29	1.95
389100--389363	70	3.7	72	75	8	220	28	26	15	28	1.96
448326--448432	31	3.3	31	78	17	87	36	20	13	29	1.90
448384--448446	32	2.0	31	84	9	83	36	19	14	30	1.91
456183--457091	73	12.6	74	75	6	665	29	15	26	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456247--456641	214	1.8	216	81	7	487	29	15	26	28	1.96
456355--457001	359	1.8	359	84	2	888	29	15	25	29	1.96
456745--457092	74	4.7	72	80	8	346	30	13	26	29	1.94
458421--458559	69	2.0	69	87	0	197	32	19	12	35	1.90
462686--462759	28	2.6	28	84	0	85	24	17	32	25	1.97
462743--463131	53	7.4	51	71	14	254	31	12	25	29	1.93
462742--462964	104	2.1	104	81	4	245	33	12	25	29	1.92
462947--463022	27	2.8	28	89	2	109	21	21	34	23	1.97
462632--463130	264	1.9	264	90	2	806	31	13	26	28	1.94
464932--464965	11	3.1	11	86	0	50	0	0	20	79	0.73
465497--465522	13	2.0	13	100	0	52	38	15	15	30	1.88
465476--465542	33	2.0	33	88	0	98	43	16	14	25	1.86
465623--465699	21	3.7	20	84	6	100	35	15	11	37	1.84
466208--466419	119	1.8	116	80	11	252	40	15	25	19	1.90
466403--467413	55	18.0	55	83	10	912	24	20	27	27	1.99
466592--466783	47	3.9	47	91	8	271	18	21	28	31	1.97
466424--467344	204	4.1	212	79	13	887	23	20	28	27	1.99
466686--467436	116	6.4	118	84	7	839	26	20	27	25	1.99
468428--468462	12	3.1	12	92	8	56	0	0	11	88	0.51
468422--468462	16	2.6	15	85	11	55	0	2	9	87	0.62
480864--481056	79	2.5	78	82	3	201	33	17	24	24	1.96
481011--481082	28	2.6	27	89	8	101	25	19	33	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481070--481292	104	2.1	104	81	4	245	34	11	24	29	1.91
480963--481456	264	1.9	264	91	2	823	32	13	25	28	1.93
481275--481350	27	2.8	27	90	6	109	22	21	32	23	1.98
481071--481458	53	7.4	51	69	13	216	32	12	24	29	1.92
483241--483272	12	2.8	12	95	4	57	0	0	15	84	0.63
483805--483830	13	2.0	13	100	0	52	38	15	15	30	1.88
486444--486703	104	2.5	103	76	6	283	37	10	20	30	1.87
488653--488698	21	2.2	21	84	0	56	0	26	0	73	0.83
495316--495369	20	2.7	20	91	0	81	35	16	12	35	1.87
497891--497947	26	2.2	26	96	0	105	38	8	12	40	1.74
497891--497956	13	5.1	13	73	0	60	39	12	12	36	1.80
497891--497955	26	2.5	26	89	0	94	38	12	12	36	1.80
504900--505071	79	2.2	79	82	5	204	26	31	9	31	1.88
508331--508405	32	2.3	32	88	0	105	36	16	14	33	1.89
508422--508476	20	2.8	20	94	0	92	36	14	10	38	1.81
512502--512546	7	6.4	7	92	0	63	51	0	8	40	1.33
512513--512563	14	3.9	14	72	15	54	54	0	3	41	1.19
512881--512920	20	2.1	19	86	13	55	40	0	0	60	0.97
513248--513288	16	2.7	15	88	7	64	21	4	9	63	1.44
513701--513767	37	1.9	35	88	11	102	29	25	11	32	1.92
514227--514252	13	2.0	13	100	0	52	30	15	15	38	1.88
514207--514270	32	2.0	33	87	3	94	29	14	17	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516384--516430	23	2.0	24	84	12	62	61	19	4	14	1.49
519012--519078	36	1.9	35	85	11	93	29	25	10	34	1.89
519538--519563	13	2.0	13	100	0	52	30	15	15	38	1.88
519518--519581	32	2.0	33	87	3	94	29	14	17	39	1.88
521555--521593	20	1.9	21	89	5	62	23	2	12	61	1.43
521806--521851	22	2.0	23	91	4	76	41	2	0	56	1.11
527712--527746	18	1.9	19	88	11	56	45	2	2	48	1.32
532844--532961	61	1.9	61	92	0	200	36	12	17	33	1.88
535078--535106	6	5.0	6	91	8	51	86	0	13	0	0.58
535078--535106	11	2.5	12	88	11	51	86	0	13	0	0.58
535480--535731	122	2.1	119	96	2	461	44	7	11	36	1.69
538478--538532	19	2.8	20	86	5	76	40	16	12	30	1.86
545485--545519	15	2.3	15	95	0	61	28	28	0	42	1.56
547175--547230	20	2.9	19	83	2	67	39	12	14	33	1.83
547179--547230	19	2.7	20	81	3	61	40	11	13	34	1.81
549695--549743	21	2.3	21	79	10	55	63	10	2	24	1.37
554213--554266	21	2.7	20	83	8	74	37	14	12	35	1.85
555673--556272	150	3.9	156	78	10	517	38	21	16	24	1.92
557573--557597	11	2.3	11	100	0	50	48	16	20	16	1.82
557879--557953	24	3.2	24	78	14	70	8	17	0	74	1.04
558475--558826	164	2.2	161	80	7	381	50	5	11	31	1.62
567053--567234	97	1.9	96	87	1	265	36	10	21	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569768--569827	20	3.0	20	82	2	66	28	18	11	41	1.85
575138--575317	94	1.9	94	88	0	270	40	12	19	27	1.87
585717--585794	32	2.4	32	100	0	156	33	15	12	38	1.85
585728--585811	19	4.7	19	70	18	63	34	15	11	38	1.84
585844--585888	20	2.2	20	88	7	65	33	11	22	33	1.89
593621--593658	16	2.4	16	95	4	69	42	18	18	21	1.90
594334--594368	16	2.2	16	100	0	70	57	5	11	25	1.56
594619--594697	33	2.4	33	95	0	140	29	13	12	44	1.81
598155--598180	13	2.0	13	100	0	52	38	15	15	30	1.88
598226--598252	13	2.1	13	100	0	54	40	14	14	29	1.86

Tables:   1   2   3   4   5   6   7