genome.fa.s205.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold205
Parameters: 2 7 7 80 10 50 1000
Length:  1179939

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 838 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1017415--1017481	37	1.9	35	88	11	102	32	11	25	29	1.92
1020357--1020381	13	1.9	13	100	0	50	36	8	16	40	1.77
1021794--1021865	20	3.6	20	77	17	78	31	23	13	30	1.94
1021897--1021947	20	2.5	20	87	6	68	37	11	15	35	1.84
1030363--1030414	20	2.7	20	87	3	79	30	21	15	32	1.94
1033217--1033246	13	2.3	13	94	0	51	36	10	16	36	1.82
1033195--1033263	33	2.1	33	86	5	95	36	18	11	33	1.87
1033291--1033348	19	3.1	19	79	16	66	31	17	13	37	1.89
1033314--1033376	32	1.9	33	87	3	92	36	14	15	33	1.88
1033941--1034031	28	3.4	28	72	14	102	25	29	9	35	1.88
1033941--1034055	51	2.2	51	95	1	203	27	28	8	34	1.87
1036744--1036793	20	2.5	20	93	0	82	32	18	16	34	1.92
1036823--1036878	19	2.9	19	91	2	85	35	17	16	30	1.92
1036863--1036889	13	2.1	13	100	0	54	40	14	14	29	1.86
1036844--1036908	33	2.0	32	88	8	96	41	13	16	27	1.87
1037435--1037548	50	2.3	50	95	1	201	29	23	5	41	1.76
1037451--1037530	28	3.1	28	61	32	68	36	17	7	38	1.78
1037534--1037575	22	1.9	22	90	0	66	21	33	4	40	1.74
1045664--1045691	13	2.2	13	100	0	56	39	7	14	39	1.73
1045747--1045791	19	2.3	19	88	3	63	35	20	15	28	1.93
1045761--1045823	33	1.9	32	87	3	90	38	15	15	30	1.89
1048659--1048732	20	3.8	20	94	1	123	31	14	18	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1051041--1051080	21	1.9	21	84	0	53	55	5	15	25	1.60
1053335--1053373	21	1.9	21	89	5	62	30	5	5	58	1.41
1053693--1053752	20	2.9	19	80	11	66	78	1	18	1	0.92
1053709--1053752	10	4.7	9	86	10	61	84	0	13	2	0.73
1055008--1055037	13	2.3	13	94	0	51	30	10	16	43	1.81
1054988--1055052	33	2.0	33	84	6	87	30	16	13	38	1.88
1056024--1056092	33	2.1	33	94	0	120	31	21	23	23	1.98
1060277--1060316	13	3.1	13	85	0	62	32	12	15	40	1.84
1061746--1061812	33	2.0	33	88	0	98	25	28	16	29	1.97
1062099--1062151	21	2.2	25	81	18	69	50	5	22	20	1.69
1062746--1062783	20	1.9	20	94	0	67	44	10	15	28	1.80
1068989--1069236	32	7.8	32	84	4	269	20	18	30	29	1.97
1068989--1069236	64	3.9	64	86	2	297	20	18	30	29	1.97
1068989--1069238	96	2.6	95	86	4	326	20	18	30	30	1.97
1069129--1069400	28	9.4	28	85	6	321	22	17	29	31	1.97
1069380--1069880	27	18.2	27	82	5	486	28	14	32	24	1.94
1069390--1069880	55	8.9	55	81	7	480	29	13	32	24	1.94
1070027--1070570	268	2.0	269	93	0	937	30	14	26	29	1.95
1078116--1078182	33	2.0	33	88	0	98	34	11	13	40	1.81
1078136--1078160	13	1.9	13	100	0	50	36	16	16	32	1.90
1078203--1078227	13	1.9	13	100	0	50	32	16	16	36	1.90
1078236--1078359	52	2.4	52	93	4	207	34	18	17	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1085269--1085316	7	7.0	7	88	2	71	87	12	0	0	0.54
1085544--1085575	16	2.0	16	93	0	55	84	9	6	0	0.78
1086501--1086645	31	4.7	31	88	6	206	25	29	18	26	1.98
1086498--1086782	93	3.0	93	82	8	288	22	31	15	30	1.95
1086501--1086664	62	2.6	62	86	6	226	25	29	17	28	1.97
1086625--1087186	34	16.8	33	82	13	634	20	33	12	32	1.91
1086792--1087186	98	4.0	97	85	11	550	20	34	13	31	1.91
1086684--1087206	202	2.6	202	93	3	892	20	34	12	32	1.90
1087191--1087260	33	2.1	35	91	5	117	27	35	17	20	1.94
1087260--1088436	49	24.8	48	85	7	1509	25	25	18	30	1.98
1087255--1088379	92	11.9	92	88	7	1407	25	26	17	30	1.98
1089282--1089348	33	2.0	33	85	0	89	34	10	13	41	1.79
1089302--1089326	13	1.9	13	100	0	50	36	16	16	32	1.90
1089390--1089414	13	1.9	13	100	0	50	32	16	16	36	1.90
1089403--1089546	52	2.8	50	82	9	155	35	18	16	29	1.93
1089425--1089546	52	2.4	52	90	4	185	36	18	18	27	1.94
1093582--1093655	20	3.7	20	81	3	103	35	13	20	31	1.91
1093600--1093675	21	3.7	21	82	3	109	40	11	18	28	1.86
1093582--1093675	41	2.3	41	100	0	188	38	12	19	29	1.89
1093714--1093739	13	2.0	13	100	0	52	38	15	15	30	1.88
1095953--1095997	21	2.1	21	84	8	56	53	4	20	22	1.63
1099845--1099924	20	3.8	20	75	15	79	26	15	15	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1099910--1099948	13	3.0	13	96	0	69	30	17	15	35	1.91
1102399--1102492	20	4.6	21	81	4	111	39	12	18	29	1.88
1102399--1102492	41	2.3	41	98	0	179	39	12	18	29	1.88
1102531--1102556	13	2.0	13	100	0	52	38	15	15	30	1.88
1103905--1104018	50	2.3	51	93	3	196	28	18	12	41	1.86
1106192--1106256	27	2.4	27	94	0	112	29	33	13	23	1.93
1117844--1117886	17	2.5	17	84	0	59	86	6	2	4	0.79
1119104--1119259	55	2.7	57	83	5	183	30	28	18	22	1.97
1119162--1119273	55	2.0	55	87	3	163	28	31	18	21	1.97
1119103--1119287	84	2.2	87	80	9	211	30	28	17	23	1.97
1119104--1119259	29	5.4	29	81	6	185	30	28	18	22	1.97
1119265--1120152	27	32.4	27	84	4	971	26	30	14	28	1.95
1119140--1120567	28	51.6	28	80	9	609	27	30	16	26	1.96
1121432--1121545	50	2.3	51	93	6	198	28	15	12	43	1.83
1127578--1127602	13	1.9	13	100	0	50	32	16	16	36	1.90
1127557--1127620	33	2.0	33	90	3	103	31	15	15	37	1.89
1131096--1131587	167	3.0	166	80	8	545	26	13	8	51	1.70
1133035--1133488	162	2.8	160	87	3	637	34	10	14	41	1.79
1133699--1134380	156	4.4	155	76	6	635	25	16	19	38	1.92
1136134--1136159	13	2.0	13	100	0	52	30	15	15	38	1.88
1136857--1136900	21	2.1	21	83	8	54	25	31	4	38	1.76
1140409--1140495	19	4.9	19	83	16	123	34	11	14	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1140430--1140492	32	2.0	32	96	0	117	34	12	15	36	1.86
1140449--1140473	13	1.9	13	100	0	50	36	16	16	32	1.90
1140515--1140581	33	2.0	33	85	0	89	25	13	16	44	1.84
1143038--1143105	27	2.5	27	88	7	93	25	30	22	22	1.99
1149033--1149058	13	2.0	13	100	0	52	38	15	15	30	1.88
1149015--1149078	32	2.0	33	87	3	94	40	17	14	28	1.88
1149517--1149583	37	1.9	35	88	11	102	32	11	25	29	1.92
1153577--1153672	48	2.0	48	97	0	183	38	8	28	25	1.84
1154313--1154338	13	2.0	13	100	0	52	38	15	15	30	1.88
1154295--1154358	32	2.0	33	87	3	94	40	17	14	28	1.88
1154816--1154911	48	2.0	48	97	0	183	25	28	8	38	1.84
1155209--1155281	20	3.6	20	81	3	101	36	13	17	31	1.89
1155226--1155302	21	3.7	21	77	6	86	42	11	16	28	1.84
1155209--1155302	41	2.3	41	94	3	163	39	12	18	29	1.88
1155341--1155366	13	2.0	13	100	0	52	38	15	15	30	1.88
1157581--1157625	21	2.1	21	84	8	56	53	4	20	22	1.63
1161390--1161484	20	4.6	19	73	16	66	27	14	14	43	1.85
1161473--1161497	13	1.9	13	100	0	50	32	20	16	32	1.94
1161454--1161490	18	2.1	18	94	0	65	27	13	16	43	1.85
1164032--1164057	13	2.0	13	100	0	52	38	15	15	30	1.88
1165027--1165052	13	2.0	13	100	0	52	38	15	15	30	1.88
1165009--1165072	32	2.0	33	87	3	94	40	17	14	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1165511--1165577	37	1.9	35	88	11	102	32	11	25	29	1.92
1169158--1169285	52	2.5	52	98	1	249	31	17	17	33	1.93
1169294--1169318	13	1.9	13	100	0	50	36	16	16	32	1.90
1169359--1169425	33	2.0	33	88	0	98	40	13	11	34	1.81
1169381--1169405	13	1.9	13	100	0	50	32	16	16	36	1.90
1176380--1176433	1	54.0	1	79	0	54	88	5	5	0	0.61
1177395--1177950	55	9.9	55	85	9	709	27	27	20	24	1.99
1177395--1177977	170	3.5	172	89	5	833	27	27	20	24	1.99

Tables:   1   2   3   4   5   6   7

The End!