genome.fa.s205.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold205
Parameters: 2 7 7 80 10 50 1000
Length:  1179939

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 838 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888726--888846	61	2.0	62	86	4	174	29	18	26	25	1.98
888745--888946	109	1.9	108	89	3	316	30	19	25	24	1.98
888889--889209	55	5.6	55	78	9	345	27	20	25	25	1.99
888858--889204	117	3.0	116	88	4	511	28	21	24	25	1.99
890292--890334	11	3.9	11	85	8	61	0	0	18	81	0.69
890289--890332	20	2.3	19	92	4	70	0	0	18	81	0.68
904801--904916	51	2.3	51	84	10	148	32	12	23	31	1.91
904666--904867	79	2.6	78	78	7	237	35	13	23	27	1.92
904883--905132	108	2.3	106	78	6	261	34	15	24	26	1.95
905008--905083	28	2.7	28	87	0	107	27	19	30	22	1.98
905068--905236	51	3.3	51	78	8	182	34	12	24	28	1.92
907554--907610	20	2.8	20	94	0	105	40	12	19	28	1.87
907593--907623	13	2.4	13	94	0	53	41	12	16	29	1.85
907554--907660	53	2.0	53	87	3	153	43	12	16	27	1.83
907573--907643	33	2.2	33	89	0	106	43	11	16	28	1.83
907607--907660	20	2.7	20	85	5	74	48	11	14	25	1.77
907676--907705	13	2.3	13	94	0	51	43	6	16	33	1.74
913768--913808	21	2.0	21	90	0	64	43	0	24	31	1.54
916018--916052	18	1.9	19	88	11	56	8	14	0	77	0.99
916946--917041	30	3.2	30	90	0	147	52	13	17	16	1.75
917105--917206	45	2.2	46	92	1	179	53	10	19	15	1.71
917215--917268	23	2.3	23	83	3	63	57	11	16	14	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
917233--917282	23	2.2	23	88	0	73	54	18	18	10	1.70
917759--917793	18	1.9	18	88	0	52	54	31	14	0	1.40
921103--921175	32	2.3	32	92	0	119	38	16	9	35	1.81
921125--921163	19	2.1	19	90	4	62	38	17	10	33	1.84
922424--922494	20	3.6	19	77	7	70	40	16	12	29	1.86
922464--922600	53	2.6	53	95	1	238	37	18	16	27	1.92
922632--922686	21	2.6	21	97	2	101	27	25	9	38	1.86
922655--922724	38	1.9	35	85	8	95	27	21	12	38	1.90
922753--922778	13	2.0	13	100	0	52	30	15	23	30	1.95
924490--924915	186	2.3	190	85	3	558	32	13	14	39	1.84
931761--931836	30	2.5	30	97	0	143	26	32	19	21	1.97
936182--936306	52	2.4	52	93	0	205	30	17	16	35	1.93
936182--936324	52	2.7	51	87	4	189	31	16	17	34	1.93
936315--936339	13	1.9	13	100	0	50	36	16	16	32	1.90
936382--936446	19	3.7	19	75	23	79	38	16	12	32	1.86
936401--936425	13	1.9	13	100	0	50	32	16	16	36	1.90
936380--936444	32	2.0	32	96	0	121	36	16	12	33	1.87
940588--940700	44	2.6	44	91	0	181	22	23	15	38	1.92
940807--941761	83	11.4	84	77	5	670	18	28	18	34	1.94
940797--941855	42	25.3	42	73	8	660	18	28	17	35	1.94
942414--942459	20	2.4	19	85	3	65	76	0	0	23	0.79
942415--942456	19	2.2	19	87	8	59	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
942940--943007	30	2.3	30	87	7	102	51	10	16	22	1.74
943092--943211	58	2.1	59	91	1	197	52	12	19	15	1.74
943187--943244	26	2.3	26	82	14	68	60	8	15	15	1.58
943231--943282	23	2.3	23	82	0	68	57	19	15	7	1.62
943754--943788	18	1.9	18	94	0	61	57	31	11	0	1.34
944421--944806	187	2.1	186	83	6	469	35	12	12	39	1.81
945884--945999	13	7.5	13	68	29	61	33	10	18	37	1.84
945897--945989	19	5.6	18	72	27	89	33	10	18	37	1.85
945883--945999	32	3.7	32	96	0	216	33	10	17	38	1.84
946044--946068	13	1.9	13	100	0	50	32	16	16	36	1.90
946077--946205	52	2.5	52	96	0	240	34	17	18	28	1.94
948309--948359	27	2.0	25	85	11	68	25	37	15	21	1.93
960011--960155	42	3.6	38	76	19	143	84	10	4	1	0.82
960013--960155	1	143.0	1	69	0	88	84	9	4	1	0.81
960011--960158	16	9.3	15	76	17	122	83	10	4	1	0.83
960014--960170	37	4.3	34	79	13	145	83	11	3	1	0.84
961603--961713	28	3.9	28	82	10	145	33	32	17	17	1.93
961596--961718	58	2.1	58	92	0	201	30	32	15	21	1.94
961720--961833	27	4.0	27	85	11	156	21	37	14	26	1.92
961595--961778	58	3.0	64	82	8	188	27	33	14	25	1.95
961837--961931	33	2.9	33	98	0	181	30	32	18	17	1.95
961934--962558	49	12.8	49	81	9	688	24	26	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
961936--962509	102	6.0	90	84	8	522	24	26	18	31	1.97
962029--962558	102	5.3	100	86	6	616	23	26	17	32	1.97
962029--962558	151	3.6	150	89	4	720	23	26	17	32	1.97
963207--963232	13	2.0	13	100	0	52	38	15	15	30	1.88
963220--963269	19	2.7	18	81	6	64	34	12	22	32	1.90
978847--978899	5	10.8	5	88	6	65	86	13	0	0	0.56
978847--978900	10	5.4	10	91	4	74	87	12	0	0	0.56
980333--980487	28	5.3	30	81	8	169	29	34	14	20	1.93
980486--980592	34	3.1	34	85	6	144	18	29	11	40	1.86
980560--980633	27	2.6	28	81	8	71	27	35	14	22	1.94
980709--981015	87	3.4	87	80	6	339	26	23	20	29	1.99
987201--987634	129	3.4	130	75	7	316	19	22	13	44	1.85
987164--987693	259	2.1	253	81	4	616	19	22	13	44	1.86
986982--987796	65	12.7	65	74	7	477	19	21	13	44	1.85
987772--987829	25	2.3	25	96	0	107	17	22	18	41	1.90
987721--987887	91	1.8	91	84	3	230	19	21	17	41	1.90
987841--988034	102	1.9	102	84	6	259	19	25	13	41	1.88
991879--991930	2	26.0	2	81	14	63	51	1	1	44	1.23
994182--994229	15	3.3	15	77	11	55	41	4	2	52	1.32
995430--995484	17	2.9	19	80	17	69	41	0	0	58	0.98
995620--995676	16	3.6	16	80	0	60	36	7	5	50	1.52
995647--995689	23	1.9	22	85	4	59	30	2	6	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
995967--996027	27	2.3	26	86	11	79	45	3	1	49	1.28
995933--996000	30	2.2	31	78	2	75	48	2	2	45	1.32
995948--996401	30	14.8	29	67	22	150	45	2	3	48	1.33
995994--996219	20	10.8	20	65	18	70	47	2	3	46	1.32
996151--996221	11	6.4	11	77	9	63	45	1	1	52	1.18
996155--996228	21	3.4	21	70	17	69	43	2	1	52	1.23
996165--996196	13	2.4	14	90	10	50	50	0	0	50	1.00
996315--996396	12	7.0	12	74	13	73	46	1	2	50	1.22
996354--996401	21	2.3	21	89	10	80	43	0	2	54	1.12
996395--996437	14	2.8	14	80	19	50	48	2	2	46	1.27
996493--996525	14	2.4	14	85	14	50	39	6	0	54	1.25
996859--996902	20	2.2	20	88	8	63	75	6	0	18	1.02
997606--997630	1	25.0	1	100	0	50	100	0	0	0	0.00
998141--998178	17	2.2	17	86	9	51	36	0	0	63	0.95
999915--999955	16	2.3	18	84	12	50	70	2	0	26	0.99
1000053--1000106	22	2.5	22	87	6	65	51	7	3	37	1.48
1001001--1001055	20	2.9	19	81	10	60	50	1	1	45	1.22
1005507--1005562	29	1.9	29	85	0	76	42	8	10	37	1.71
1005595--1005653	29	2.0	29	90	0	91	33	16	8	40	1.79
1008351--1008397	3	16.0	3	77	4	51	68	0	2	29	1.02
1008464--1008522	21	2.8	21	82	5	66	38	0	0	61	0.96
1008461--1008535	31	2.3	32	80	11	82	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1008490--1008531	22	2.0	20	86	9	57	40	0	0	59	0.97
1008575--1008611	17	2.2	17	90	0	56	75	0	2	21	0.92
1008603--1008668	32	2.0	33	82	8	82	68	0	7	24	1.15
1010181--1010205	13	1.9	13	100	0	50	36	16	16	32	1.90
1010264--1010312	20	2.5	18	78	18	53	40	12	20	26	1.87
1016495--1016535	21	2.0	21	85	9	57	39	12	9	39	1.76
1016575--1016645	20	3.6	19	77	7	70	40	16	12	29	1.86
1016615--1016751	53	2.6	53	96	1	247	37	18	17	27	1.93
1016794--1016849	21	2.6	22	88	5	78	28	21	8	41	1.83
1016907--1016945	13	3.0	13	92	0	69	30	15	17	35	1.91

Tables:   1   2   3   4   5   6   7