genome.fa.s205.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold205
Parameters: 2 7 7 80 10 50 1000
Length:  1179939

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 838 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598911--598950	20	2.0	21	95	5	73	32	30	0	37	1.58
600736--600802	31	2.2	31	81	10	75	50	1	20	26	1.57
600897--600937	13	3.2	13	85	0	55	31	12	17	39	1.86
603651--603676	13	2.0	13	100	0	52	38	15	15	30	1.88
603633--603696	32	2.0	33	90	3	103	42	15	14	28	1.86
608267--608292	13	2.0	13	100	0	52	38	15	15	30	1.88
608249--608312	32	2.0	33	87	3	94	42	14	14	29	1.84
609025--609050	13	2.0	13	100	0	52	38	15	15	30	1.88
611268--611312	21	2.1	22	88	8	67	55	4	17	22	1.60
613101--613131	15	2.1	15	93	0	53	48	16	22	12	1.80
615202--615227	13	2.0	13	100	0	52	30	15	15	38	1.88
617009--617052	21	2.1	21	87	8	63	40	4	29	25	1.75
617009--617048	20	2.0	21	85	5	55	40	5	27	27	1.77
617751--617776	13	2.0	13	100	0	52	38	15	15	30	1.88
617735--617796	32	1.9	33	86	3	90	41	17	12	27	1.86
620473--620544	20	3.6	21	73	17	64	31	16	13	37	1.88
620590--620619	13	2.3	13	100	0	60	33	16	13	36	1.88
620574--620640	33	2.0	33	88	5	100	31	13	20	34	1.92
623970--624330	82	4.4	82	80	4	381	27	32	20	20	1.97
623970--624302	165	2.0	165	83	4	413	27	32	20	20	1.97
632469--632509	21	2.0	21	85	9	57	39	12	9	39	1.76
632549--632619	20	3.6	19	77	7	70	39	16	14	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632589--632725	53	2.6	53	96	1	247	37	18	17	27	1.93
632848--632873	13	2.0	13	100	0	52	30	15	15	38	1.88
638738--639694	128	7.5	128	72	12	455	17	29	17	35	1.93
638738--639752	85	12.0	86	74	11	679	17	29	17	35	1.93
638738--639752	43	24.0	43	74	10	675	17	29	17	35	1.93
640129--640191	34	1.9	33	93	6	110	44	12	12	30	1.80
646342--646375	13	2.6	13	95	0	59	35	20	14	29	1.93
648919--648955	11	3.0	13	84	15	60	40	13	13	32	1.84
649719--650717	84	11.9	82	72	11	475	18	30	16	34	1.93
649736--650682	126	7.5	125	77	8	644	18	30	16	34	1.94
650144--650310	83	2.0	82	84	1	217	15	32	17	33	1.92
649797--650682	42	21.0	42	75	10	528	18	29	17	34	1.93
649857--650723	126	6.9	125	77	7	675	18	29	17	34	1.94
652237--652283	20	2.3	21	96	3	87	29	23	8	38	1.84
653111--653135	13	1.9	13	100	0	50	32	16	16	36	1.90
653721--653767	23	2.0	24	84	12	62	61	19	4	14	1.49
656885--657021	53	2.6	53	92	1	238	27	16	18	37	1.92
656991--657061	20	3.5	20	77	11	74	29	14	16	39	1.88
657101--657141	21	2.0	21	85	9	57	39	9	12	39	1.76
657880--657957	22	3.4	22	68	15	68	25	34	26	12	1.92
657881--657984	47	2.2	47	91	0	172	27	33	23	15	1.95
657926--658107	82	2.2	82	89	1	285	26	34	23	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657806--658064	129	2.0	129	88	0	383	27	33	22	17	1.96
666114--666162	21	2.3	21	75	0	53	30	2	22	44	1.64
666787--666841	19	2.8	19	91	2	83	30	20	10	38	1.87
670336--670422	19	4.8	19	72	17	78	36	14	16	32	1.89
670360--670451	32	2.8	32	90	1	130	40	15	16	28	1.88
670407--670433	13	2.1	13	100	0	54	40	14	14	29	1.86
671185--671232	20	2.4	20	85	0	60	33	12	14	39	1.84
671282--671354	20	3.6	20	83	9	94	30	12	10	46	1.76
672428--672459	16	2.0	16	93	0	55	53	0	0	46	1.00
672504--672582	40	2.0	41	82	7	99	7	21	0	70	1.11
672544--672599	15	3.7	15	77	13	53	5	26	0	67	1.11
672559--672618	27	2.2	28	85	8	79	1	23	0	75	0.90
672562--672614	17	3.1	16	84	10	61	1	22	0	75	0.90
672576--672617	20	2.1	20	90	0	66	0	23	0	76	0.79
672576--672618	10	4.6	10	77	16	56	0	23	0	76	0.78
676291--676315	13	1.9	13	100	0	50	36	16	16	32	1.90
677128--677192	20	3.2	20	82	10	87	30	15	12	41	1.84
678386--678455	15	4.7	15	79	11	65	2	27	0	70	1.02
678361--678456	17	5.7	17	71	15	58	3	25	0	71	1.00
678419--678458	10	4.1	10	84	15	57	0	27	0	72	0.85
678363--678459	20	5.1	20	73	15	80	3	24	0	72	0.99
678379--678450	37	1.9	36	81	15	85	4	25	0	70	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678407--678460	17	3.2	16	82	10	63	1	25	0	72	0.95
679696--679785	46	2.0	44	93	4	153	27	6	16	48	1.71
682416--682463	16	3.0	16	77	17	55	64	4	2	29	1.23
686121--686169	25	2.0	24	88	4	71	42	0	0	57	0.99
691108--691133	2	13.0	2	100	0	52	50	0	0	50	1.00
692604--692629	13	2.0	13	100	0	52	30	30	15	23	1.95
693104--693187	44	1.9	44	100	0	168	41	11	17	28	1.85
695816--695853	2	19.0	2	100	0	76	50	0	0	50	1.00
698340--698792	79	5.8	76	75	11	339	35	13	24	26	1.92
698329--698791	158	3.0	154	80	8	451	34	12	25	27	1.92
698599--698743	73	2.0	73	81	0	173	36	14	23	25	1.93
698380--698791	152	2.6	154	79	7	449	35	12	24	27	1.91
699345--699447	51	2.0	51	96	0	188	33	15	14	35	1.88
701306--701362	21	2.7	21	97	0	105	33	14	12	40	1.83
702763--702807	21	2.1	22	84	12	58	66	4	6	22	1.33
703219--703347	35	3.6	34	76	16	134	55	0	1	42	1.15
703220--703273	21	2.6	21	72	21	51	61	0	0	38	0.96
703242--703351	39	3.0	36	82	8	123	52	0	1	44	1.17
703314--703363	25	2.0	25	88	0	73	54	4	0	42	1.19
703379--703418	20	2.1	19	85	4	53	75	0	5	20	0.99
704682--704734	20	2.7	20	91	2	81	30	13	18	37	1.89
710228--710418	79	2.4	78	83	4	224	31	16	27	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710373--710444	27	2.7	26	87	10	92	22	19	33	25	1.97
710425--710825	52	7.6	53	69	15	240	31	11	26	30	1.92
710319--710820	264	1.9	264	92	2	837	30	12	26	30	1.93
710425--710649	52	4.3	51	82	3	261	31	12	27	29	1.92
710634--710706	27	2.6	28	84	2	94	20	19	32	27	1.97
713181--713206	13	2.0	13	100	0	52	38	15	15	30	1.88
713160--713226	33	2.0	33	88	0	98	43	16	14	25	1.86
713246--713313	19	3.9	18	76	23	83	38	14	11	35	1.83
713268--713292	13	1.9	13	100	0	50	32	16	16	36	1.90
713249--713311	32	2.0	32	96	0	117	36	15	12	34	1.86
713349--713425	21	3.7	20	87	3	91	33	16	14	35	1.89
715760--715812	23	2.4	22	83	3	61	45	3	13	37	1.61
717088--717116	3	9.7	3	100	0	58	65	0	0	34	0.93
718052--718121	36	1.9	37	85	2	97	20	11	5	62	1.48
720317--720351	2	17.5	2	100	0	70	51	0	0	48	1.00
724167--724217	27	2.0	27	85	11	72	25	23	15	35	1.94
727452--727511	15	3.9	15	72	12	50	20	10	16	53	1.71
727452--727513	31	2.0	31	81	6	72	20	11	16	51	1.74
727684--727908	108	2.1	110	81	9	264	49	5	5	39	1.49
727894--727928	18	1.9	18	88	11	54	60	0	0	40	0.97
727864--727922	31	1.9	31	85	0	82	67	1	0	30	1.00
728357--728419	23	2.7	23	80	11	74	76	1	17	4	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729587--729623	17	2.0	20	85	15	53	32	5	5	56	1.45
733250--733287	3	12.7	3	94	0	67	31	0	2	65	1.06
734407--734457	16	3.3	15	81	8	57	19	0	11	68	1.20
738576--738609	18	1.9	18	88	5	52	55	8	0	35	1.31
742463--742509	17	2.8	17	84	12	69	42	0	6	51	1.27
742917--742983	37	1.9	35	88	11	102	29	25	11	32	1.92
743442--743467	13	2.0	13	100	0	52	30	15	15	38	1.88
743528--743600	20	3.6	20	81	3	101	31	19	13	35	1.91
743506--743600	41	2.3	42	96	1	174	29	17	12	40	1.87
744154--744183	15	2.0	15	100	0	60	26	13	13	46	1.80

Tables:   1   2   3   4   5   6   7