genome.fa.s253.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold253
Parameters: 2 7 7 80 10 50 1000
Length:  2064896

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  11  of  13  ( 1496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1443358--1443405	11	4.5	11	80	12	55	33	0	0	66	0.92
1444852--1444951	47	2.1	47	88	3	148	52	4	8	36	1.50
1445532--1445559	5	5.6	5	100	0	56	42	0	0	57	0.99
1445740--1445806	24	2.9	23	76	13	66	28	2	1	67	1.14
1445908--1445968	25	2.5	24	73	17	56	44	11	9	34	1.74
1447166--1447206	5	8.2	5	97	0	73	56	0	2	41	1.13
1447698--1447831	63	2.0	67	88	7	204	50	8	0	40	1.37
1448758--1448789	4	8.0	4	100	0	64	25	0	0	75	0.81
1453205--1453242	3	12.7	3	83	10	51	63	0	0	36	0.95
1453465--1453498	11	2.8	13	86	13	54	58	0	0	41	0.98
1453927--1454013	45	1.9	45	86	4	122	44	3	2	49	1.31
1455927--1455959	17	1.9	17	88	11	50	18	0	0	81	0.68
1456415--1456470	17	3.8	16	71	24	50	35	0	0	64	0.94
1456794--1456840	21	2.1	23	88	7	71	51	6	0	42	1.27
1458045--1458116	28	2.5	28	76	17	67	36	1	5	56	1.31
1462588--1462785	99	2.0	98	94	1	342	36	16	16	30	1.91
1465187--1465230	19	2.2	20	80	11	56	56	6	4	31	1.46
1465301--1465436	6	21.8	6	66	20	57	58	0	1	39	1.13
1465319--1465375	24	2.3	24	80	17	64	56	0	1	42	1.10
1465298--1465415	25	4.8	26	73	15	99	55	0	1	41	1.15
1468986--1469044	26	2.2	27	87	3	84	50	0	0	49	1.00
1474149--1474177	7	4.1	7	100	0	58	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1479681--1479764	30	2.7	30	77	14	91	51	0	1	47	1.08
1479806--1479964	76	2.1	76	90	0	255	52	2	5	39	1.39
1479838--1479946	24	4.4	24	65	21	71	56	1	1	39	1.20
1479999--1480036	19	1.9	19	89	5	58	73	0	2	23	0.95
1488343--1488381	16	2.5	15	83	8	51	43	0	0	56	0.99
1488668--1488756	31	2.9	29	77	14	90	32	2	3	61	1.24
1488676--1488756	33	2.6	32	81	14	89	30	1	3	64	1.19
1488702--1488779	34	2.3	34	80	12	88	33	1	2	62	1.17
1488714--1488771	23	2.5	22	81	15	64	32	1	0	65	1.03
1488679--1488771	11	7.6	12	70	23	61	31	1	3	64	1.16
1488715--1488771	24	2.4	24	85	8	73	33	1	0	64	1.04
1489427--1489465	2	19.5	2	100	0	78	0	48	0	51	1.00
1496574--1496630	16	3.5	16	78	9	62	38	0	1	59	1.08
1496574--1496627	17	3.2	17	76	12	58	35	0	1	62	1.06
1500555--1500593	13	2.8	14	92	7	62	61	0	0	38	0.96
1505763--1505800	2	19.0	2	100	0	76	50	0	0	50	1.00
1509261--1509352	17	5.7	16	72	19	66	42	1	0	56	1.06
1509229--1509338	33	3.2	33	72	17	89	43	0	0	54	1.12
1509244--1509380	33	4.1	34	74	16	99	40	0	0	57	1.09
1509242--1509374	16	8.1	17	67	20	52	42	0	0	56	1.10
1509309--1509422	21	5.2	21	67	16	63	46	0	0	52	1.06
1514764--1514803	19	2.1	19	100	0	80	52	20	5	22	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1515114--1515141	2	14.0	2	100	0	56	50	0	0	50	1.00
1521281--1521313	16	2.0	17	88	5	50	33	0	6	60	1.21
1521770--1521820	26	1.9	26	84	11	68	62	3	0	33	1.13
1521874--1521929	15	3.6	16	79	9	62	62	3	0	33	1.12
1521883--1521928	17	2.9	16	84	9	58	65	4	0	30	1.12
1522306--1522341	2	18.0	2	94	0	63	50	2	0	47	1.15
1522306--1522348	10	4.3	10	87	0	59	51	4	0	44	1.22
1523043--1523075	2	17.0	2	93	6	59	51	0	0	48	1.00
1523387--1523417	3	10.3	3	100	0	62	67	0	0	32	0.91
1524665--1524699	2	17.5	2	100	0	70	48	0	0	51	1.00
1524952--1524983	2	16.0	2	93	0	55	46	0	3	50	1.17
1525856--1525931	35	2.1	35	81	13	84	46	0	0	53	1.00
1536010--1536088	36	2.2	36	80	13	90	39	10	3	46	1.56
1538711--1538747	2	18.5	2	100	0	74	51	0	0	48	1.00
1539372--1539409	13	3.2	12	82	10	51	26	0	0	73	0.83
1539379--1539409	13	2.4	13	94	0	53	25	0	0	74	0.82
1539780--1539829	15	3.3	16	76	21	54	50	0	0	50	1.00
1539800--1539834	13	2.6	14	90	4	54	42	0	0	57	0.99
1540618--1540689	5	16.0	5	72	16	52	61	0	0	38	0.96
1540607--1540689	28	2.9	29	75	20	84	62	0	0	37	0.95
1540621--1540670	12	3.9	13	77	20	52	64	0	0	36	0.94
1540610--1540662	17	3.2	16	81	7	61	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1540609--1540722	57	2.0	58	84	5	151	59	0	0	39	1.03
1540948--1541011	10	5.5	11	72	20	51	62	6	0	31	1.20
1542676--1542708	2	16.5	2	100	0	66	51	0	0	48	1.00
1556923--1556955	2	16.5	2	100	0	66	48	0	0	51	1.00
1559997--1560039	21	2.0	21	86	4	59	53	0	0	46	1.00
1560008--1560055	21	2.3	20	86	13	62	47	0	0	52	1.00
1570819--1570861	14	3.0	14	80	16	52	55	0	0	44	0.99
1575160--1575201	2	21.0	2	100	0	84	50	0	0	50	1.00
1575922--1575969	13	3.6	13	86	11	62	41	0	2	56	1.11
1576760--1576799	21	2.0	19	90	9	62	50	0	0	50	1.00
1577485--1577544	22	2.6	24	82	17	83	71	0	0	28	0.86
1577489--1577554	11	5.7	11	76	20	64	68	1	0	30	0.99
1577485--1577554	24	3.0	22	86	14	81	68	1	0	30	0.98
1577502--1577554	17	3.2	17	82	12	65	66	1	0	32	1.03
1577638--1577678	14	2.9	14	85	0	64	0	19	0	80	0.71
1577633--1577680	21	2.4	21	86	6	64	0	16	0	83	0.65
1577938--1578041	42	2.5	42	83	10	124	53	0	0	46	1.00
1580197--1580226	2	15.0	2	100	0	60	50	0	0	50	1.00
1580823--1580857	17	2.1	16	89	5	52	57	0	2	40	1.14
1584151--1584191	17	2.6	15	82	14	55	39	0	12	48	1.41
1589761--1589799	19	2.1	19	90	9	62	64	12	0	23	1.28
1591297--1591346	15	3.3	14	81	13	55	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1602061--1602095	18	1.9	18	94	0	61	42	14	2	40	1.60
1604667--1604697	4	7.8	4	100	0	62	77	0	0	22	0.77
1606096--1606143	2	24.0	2	100	0	96	50	0	0	50	1.00
1606205--1606424	76	2.9	75	77	4	235	36	21	13	28	1.91
1606190--1606424	38	6.2	38	77	2	188	35	20	14	28	1.93
1610243--1610290	2	24.0	2	91	0	78	50	4	0	45	1.21
1611764--1611804	3	13.7	3	100	0	82	68	0	31	0	0.90
1619758--1619800	12	3.8	11	80	14	52	48	0	2	48	1.14
1619765--1619803	12	3.2	12	82	10	53	46	0	2	51	1.14
1623753--1623784	2	16.0	2	93	0	55	50	3	0	46	1.17
1624206--1624344	54	2.6	53	87	4	197	52	5	6	35	1.49
1625118--1625146	3	9.7	3	100	0	58	68	0	31	0	0.89
1631182--1631219	15	2.6	14	84	15	51	47	2	0	50	1.15
1631614--1631667	9	6.0	9	78	6	56	33	1	3	61	1.25
1633924--1634015	28	3.4	28	80	5	93	29	5	18	46	1.71
1638497--1638588	27	3.4	27	78	14	102	26	7	20	45	1.77
1639672--1639715	21	2.1	21	100	0	88	27	18	13	40	1.88
1639940--1640027	44	2.0	44	100	0	176	43	13	13	29	1.83
1642046--1642071	2	13.0	2	100	0	52	50	0	0	50	1.00
1647203--1647247	22	2.0	22	100	0	90	35	8	24	31	1.86
1649101--1649133	15	2.2	16	89	10	52	27	0	0	72	0.85
1649099--1649150	21	2.4	21	87	9	70	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1649903--1649946	22	2.0	23	81	4	54	45	2	0	52	1.13
1649937--1649961	6	4.2	6	100	0	50	68	0	0	32	0.90
1650306--1650360	13	4.2	13	71	17	51	49	0	0	50	1.00
1650480--1650535	29	2.0	28	86	10	78	37	0	1	60	1.07
1650480--1650576	45	2.1	48	83	14	123	38	0	3	58	1.14
1650509--1650576	16	4.2	17	74	20	65	38	0	2	58	1.13
1660529--1660620	32	2.9	32	98	0	175	22	15	7	54	1.66
1661772--1661838	23	2.9	24	76	8	59	34	2	0	62	1.10
1661778--1661837	28	2.1	28	84	6	77	33	3	0	63	1.11
1663785--1663968	96	1.9	97	83	3	237	33	16	25	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13