genome.fa.s253.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold253
Parameters: 2 7 7 80 10 50 1000
Length:  2064896

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  8  of  13  ( 1496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
988351--988385	17	2.1	17	89	5	54	34	0	0	65	0.93
989723--989779	17	3.2	17	77	5	60	49	0	0	50	1.00
989737--989769	6	5.7	6	85	7	50	48	0	0	51	1.00
990894--990948	22	2.4	23	84	3	67	70	1	3	23	1.12
990967--991019	22	2.5	21	75	19	56	56	0	0	43	0.99
990940--991017	29	2.7	28	71	11	68	56	0	0	43	0.99
991239--991263	9	2.8	9	100	0	50	20	0	0	80	0.72
993074--993110	2	18.5	2	88	0	56	2	2	43	51	1.30
997236--997284	22	2.2	22	92	0	80	26	2	6	65	1.27
997236--997317	27	3.0	28	80	5	69	28	3	6	62	1.36
997898--997939	13	3.2	13	84	15	52	21	0	2	76	0.90
997898--997935	14	2.8	14	88	11	53	21	0	2	76	0.91
997890--997938	21	2.4	20	83	10	55	20	2	2	75	1.00
998440--998483	21	2.2	20	87	4	61	47	4	0	47	1.22
998446--998500	28	2.0	28	86	10	78	47	5	0	47	1.25
998448--998502	19	2.9	19	84	10	60	47	3	0	49	1.19
999312--999344	13	2.4	14	95	5	59	39	0	0	60	0.97
999407--999467	18	3.3	18	79	4	59	55	1	0	42	1.09
1001109--1001143	3	11.7	3	100	0	70	31	34	0	34	1.58
1002404--1002433	14	2.1	14	93	0	51	70	0	0	30	0.88
1002977--1003075	30	3.4	30	88	5	141	52	0	4	43	1.20
1004104--1004140	17	2.2	17	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1004438--1004478	13	3.0	14	73	20	50	48	0	0	51	1.00
1004788--1004844	10	6.1	9	78	15	53	50	0	0	49	1.00
1004790--1004847	28	2.1	28	87	9	84	50	0	0	50	1.00
1006043--1006082	2	19.5	2	94	5	71	50	0	2	47	1.14
1006593--1006639	21	2.2	22	85	11	62	46	0	0	53	1.00
1008103--1008138	12	3.0	13	88	11	51	58	0	0	41	0.98
1013070--1013124	17	3.1	18	80	16	62	43	0	0	56	0.99
1013070--1013115	20	2.5	20	83	16	64	45	0	0	54	0.99
1018491--1018532	14	2.9	14	78	21	50	45	0	0	54	0.99
1019705--1019760	27	2.1	26	87	9	78	42	5	8	42	1.59
1026208--1026277	18	3.7	20	75	12	67	40	1	0	58	1.07
1026242--1026302	27	2.3	27	78	15	65	44	0	0	55	0.99
1028852--1029069	34	6.4	33	81	9	251	41	25	7	25	1.82
1028852--1029069	103	2.1	101	91	1	346	41	25	7	25	1.82
1033425--1033642	34	6.5	33	82	8	260	40	26	7	25	1.82
1033427--1033642	68	3.2	67	85	2	290	40	25	7	25	1.82
1033425--1033642	102	2.2	100	87	2	328	40	26	7	25	1.82
1034793--1034863	32	2.2	33	82	12	94	52	5	0	42	1.25
1034809--1034859	2	25.5	2	79	15	52	49	3	0	47	1.20
1035694--1035749	21	2.9	21	72	25	59	48	0	0	51	1.00
1035703--1035737	17	2.0	18	88	5	54	51	0	0	48	1.00
1036379--1036404	4	6.5	4	100	0	52	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040419--1040455	16	2.4	16	91	8	60	27	0	0	72	0.84
1041769--1041885	12	10.6	11	66	22	50	66	0	2	30	1.05
1041774--1041871	32	3.0	32	85	10	112	69	0	3	27	1.03
1041769--1041887	11	10.2	12	69	26	62	66	0	2	31	1.05
1041861--1041912	14	3.4	14	74	25	52	55	1	1	40	1.22
1041799--1041880	22	3.9	22	74	12	75	69	0	2	28	1.01
1043411--1043478	16	4.2	16	71	21	52	44	2	1	51	1.25
1043411--1043478	32	2.1	32	83	8	84	44	2	1	51	1.25
1043796--1043841	24	2.0	23	82	4	56	39	0	0	60	0.97
1043971--1044004	17	2.0	17	88	0	50	52	0	0	47	1.00
1044615--1044673	28	2.1	29	84	6	77	42	3	6	47	1.46
1044858--1044903	16	2.9	16	87	6	58	32	0	0	67	0.91
1047388--1047427	20	2.0	20	85	9	55	45	0	5	50	1.23
1047435--1047496	21	3.0	20	80	15	72	30	0	1	67	1.00
1047448--1047515	16	4.1	17	81	14	81	32	0	1	66	1.01
1047359--1047476	37	3.2	37	68	18	84	35	0	2	61	1.09
1048213--1048252	20	2.0	20	85	0	53	52	0	0	47	1.00
1048858--1048921	24	2.5	26	83	16	80	54	3	0	42	1.16
1049229--1049273	21	2.2	20	84	4	54	44	0	4	51	1.21
1051050--1051104	27	2.0	27	86	13	78	32	3	0	63	1.12
1052187--1052229	22	2.0	21	90	4	68	30	0	11	58	1.34
1052189--1052239	22	2.3	22	82	0	66	23	1	11	62	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1053838--1053875	10	4.0	10	86	13	62	63	0	0	36	0.95
1053838--1053875	18	2.1	18	95	0	67	63	0	0	36	0.95
1062182--1062210	2	15.0	2	92	7	51	51	0	0	48	1.00
1069291--1069333	19	2.4	18	81	11	52	32	0	0	67	0.91
1069307--1069351	23	1.9	24	82	13	58	31	0	0	68	0.89
1069297--1069372	26	2.9	26	75	20	70	38	0	0	61	0.96
1069379--1069428	21	2.3	22	83	12	68	34	2	0	64	1.05
1069379--1069434	19	2.9	19	80	17	62	35	1	0	62	1.06
1069379--1069434	21	2.8	19	79	12	60	35	1	0	62	1.06
1071742--1071778	17	2.1	18	90	5	58	48	0	0	51	1.00
1071738--1071781	17	2.7	16	80	13	54	43	0	0	56	0.99
1071841--1071878	19	2.0	19	100	0	76	36	10	15	36	1.82
1072238--1072291	26	2.1	26	86	6	74	42	0	3	53	1.18
1072216--1072275	20	2.8	22	78	16	63	43	0	5	51	1.23
1072237--1072282	13	3.5	13	77	16	51	43	0	2	54	1.12
1076311--1076345	3	11.7	3	100	0	70	65	0	0	34	0.93
1078000--1078287	88	3.3	88	83	2	319	35	22	17	24	1.95
1078129--1078456	164	2.0	164	83	2	408	37	20	17	25	1.94
1078314--1078705	89	4.4	88	83	2	464	36	20	18	24	1.95
1080144--1080168	13	1.9	13	100	0	50	72	12	0	16	1.13
1089387--1089422	6	6.5	6	81	18	51	66	0	0	33	0.92
1090004--1090069	33	2.0	32	88	8	98	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1090184--1090244	24	2.4	26	81	18	83	40	0	1	57	1.08
1090195--1090255	25	2.4	25	89	10	90	44	1	0	54	1.10
1090211--1090262	25	2.0	25	81	7	59	48	1	0	50	1.12
1090907--1091001	23	3.9	24	69	13	68	46	0	1	52	1.07
1091005--1091032	11	2.5	11	100	0	56	82	0	0	17	0.68
1091669--1091759	30	3.2	29	75	19	102	51	1	4	42	1.29
1091672--1091756	24	3.2	25	72	21	75	55	1	4	38	1.29
1091805--1091852	23	2.1	23	84	3	62	25	0	4	70	1.04
1095743--1095787	22	2.0	22	100	0	90	51	0	0	48	1.00
1096084--1096160	14	5.9	14	67	18	58	48	0	0	51	1.00
1096089--1096176	26	3.4	25	80	4	77	50	1	0	48	1.08
1096120--1096154	19	1.9	17	88	11	52	48	0	0	51	1.00
1096117--1096176	25	2.3	26	97	2	113	46	1	0	51	1.10
1096170--1096217	16	2.9	16	81	6	51	54	0	4	41	1.20
1096405--1096453	12	4.4	11	80	12	55	55	0	0	44	0.99
1103183--1103233	23	2.2	23	83	13	61	72	1	0	25	0.95
1103181--1103219	15	2.7	14	88	4	60	71	2	0	25	0.98
1103307--1103344	15	2.4	16	73	8	51	55	0	0	44	0.99
1103374--1103424	11	4.6	11	78	9	50	64	1	0	33	1.05
1103892--1103958	27	2.3	29	80	14	77	44	1	0	53	1.09
1108102--1108154	17	2.9	18	77	8	54	66	0	0	33	0.92
1112729--1112755	14	1.9	14	100	0	54	29	37	11	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1112955--1112992	20	1.9	19	94	5	67	57	0	0	42	0.98
1112958--1113020	30	2.1	32	82	14	89	50	0	0	49	1.00
1113540--1113580	16	2.5	17	84	7	59	43	0	0	56	0.99
1113560--1113600	21	2.0	21	85	4	57	51	0	0	48	1.00
1113548--1113611	28	2.3	28	76	7	69	45	0	0	54	0.99
1117517--1117548	2	16.0	2	93	0	55	46	0	3	50	1.17
1121238--1121324	40	2.2	40	83	8	115	55	1	0	43	1.07
1121690--1121721	2	16.5	2	93	6	57	50	0	0	50	1.00
1122563--1122640	36	2.3	32	79	16	77	50	1	1	47	1.17
1122633--1122695	27	2.3	28	73	13	67	65	1	0	33	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13