genome.fa.s253.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold253
Parameters: 2 7 7 80 10 50 1000
Length:  2064896

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  6  of  13  ( 1496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668728--668813	29	2.9	30	79	6	79	44	0	1	54	1.07
668802--668849	15	3.3	14	77	16	53	58	0	0	41	0.98
668802--668853	16	3.5	15	75	24	56	57	0	0	42	0.98
670394--670429	6	6.2	6	87	6	56	47	0	2	50	1.15
673216--673240	2	12.5	2	100	0	50	48	0	0	52	1.00
677712--677744	17	1.9	17	93	0	57	54	0	0	45	0.99
680493--680535	2	21.5	2	100	0	86	51	0	0	48	1.00
682595--682625	16	1.9	16	100	0	62	32	25	19	22	1.97
689119--689164	14	3.3	14	79	11	58	39	2	2	56	1.24
690048--690090	11	3.9	10	82	17	50	32	2	0	65	1.06
690043--690096	17	3.1	18	84	12	69	35	1	0	62	1.06
690042--690113	22	3.4	22	78	16	55	34	1	1	62	1.13
690251--690333	7	9.2	9	72	26	54	65	1	1	32	1.08
690295--690327	16	2.2	16	89	10	52	72	0	0	27	0.85
690297--690353	21	2.7	21	86	10	73	73	1	0	24	0.92
690809--690907	16	6.9	15	70	24	63	35	2	0	62	1.07
690837--690907	18	3.9	17	73	21	56	33	1	0	64	1.02
690810--690907	25	3.8	26	76	14	87	34	2	0	63	1.06
690833--690911	28	2.9	27	77	19	74	31	1	0	67	0.99
691961--692014	21	2.4	23	78	12	58	44	0	0	55	0.99
692040--692088	23	2.1	23	88	3	71	34	2	0	63	1.06
692338--692385	10	5.3	10	78	19	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692344--692405	9	7.1	9	72	17	51	53	0	0	46	1.00
692376--692429	18	3.2	17	73	19	51	55	0	0	44	0.99
692344--692393	25	2.0	25	96	0	91	54	0	0	46	1.00
692700--692730	15	2.1	15	93	0	53	51	0	0	48	1.00
692721--692762	15	3.2	13	81	15	50	69	0	0	30	0.89
692732--692774	14	3.0	14	89	3	59	67	0	0	32	0.91
692770--692816	22	2.1	23	88	4	69	42	0	0	57	0.98
695173--695213	20	2.1	19	86	13	57	51	0	0	48	1.00
695272--695310	2	19.5	2	100	0	78	48	0	0	51	1.00
695615--695687	30	2.5	29	84	10	103	46	8	1	43	1.42
696633--696724	42	2.2	42	82	7	107	56	0	0	43	0.99
696677--696719	19	2.3	18	84	8	50	58	0	0	41	0.98
697037--697100	33	1.9	33	87	6	94	29	15	23	31	1.95
697121--697161	15	2.5	17	80	19	59	53	0	0	46	1.00
697124--697154	15	2.1	15	100	0	62	58	0	0	41	0.98
697778--697859	27	3.0	27	75	10	78	59	2	1	36	1.18
697807--697868	21	3.0	20	75	13	63	56	3	1	38	1.25
697807--697931	21	5.9	21	67	18	62	56	2	0	40	1.18
697884--697921	17	2.1	19	85	9	53	60	0	0	39	0.97
698613--698675	12	5.3	12	73	9	58	60	0	0	39	0.97
698595--698675	36	2.4	33	78	10	83	59	0	1	39	1.05
698612--698675	24	2.8	24	80	4	78	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698641--698720	29	2.7	29	77	9	99	55	2	0	42	1.13
701246--701287	22	2.0	20	86	9	57	38	0	4	57	1.20
701874--701909	16	2.2	16	95	0	63	47	0	0	52	1.00
703135--703188	17	3.0	18	84	13	58	48	0	1	50	1.11
703150--703227	16	4.8	17	75	10	65	46	1	1	51	1.17
703234--703258	13	1.9	13	100	0	50	48	0	0	52	1.00
705277--705360	17	5.0	17	74	20	70	57	1	0	41	1.06
705298--705387	31	2.8	32	81	8	103	54	1	1	43	1.14
705309--705385	26	2.8	26	78	13	66	51	0	1	46	1.09
707257--707302	20	2.3	20	84	0	56	13	45	4	36	1.63
710740--710784	19	2.5	17	85	7	63	57	0	0	42	0.98
712826--712885	29	2.0	31	87	6	88	48	0	0	51	1.00
712830--712913	37	2.2	38	81	12	93	48	1	1	48	1.16
716122--716193	21	3.4	21	70	16	58	55	0	0	44	0.99
717104--717138	2	17.5	2	100	0	70	48	0	0	51	1.00
717761--717786	2	13.0	2	100	0	52	0	50	0	50	1.00
717786--717829	2	22.0	2	85	0	61	50	0	4	45	1.22
717863--717914	15	3.6	14	78	12	52	55	0	0	44	0.99
718059--718106	20	2.5	19	80	6	62	52	2	2	43	1.24
722197--722255	19	3.1	19	71	9	57	27	1	10	61	1.38
724210--724301	48	1.9	48	95	0	166	45	2	13	39	1.55
728897--728982	28	3.2	27	80	9	88	27	8	19	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
731536--731581	21	2.1	22	84	4	58	30	19	30	19	1.97
733465--733535	27	2.6	27	86	6	90	22	5	23	47	1.72
737549--737581	2	16.5	2	100	0	66	48	0	0	51	1.00
738477--738528	20	2.8	19	72	11	54	50	3	1	44	1.31
739160--739208	17	2.7	19	81	12	75	42	0	2	55	1.11
744474--744526	2	26.5	2	100	0	106	50	0	0	49	1.00
749650--749683	2	17.0	2	93	0	59	47	0	2	50	1.16
749811--749863	2	27.0	2	88	3	81	49	1	0	49	1.12
751828--751906	12	7.0	12	78	9	78	31	2	1	64	1.15
752018--752076	31	1.9	31	100	0	118	45	6	10	37	1.65
752019--752084	31	2.1	30	91	5	89	48	6	10	34	1.62
754566--754605	6	6.7	6	88	0	53	12	2	65	20	1.38
759198--759254	19	3.1	18	78	9	53	43	0	0	56	0.99
760037--760138	29	3.7	28	71	19	81	43	0	0	54	1.13
760334--760362	2	14.5	2	100	0	58	51	0	48	0	1.00
767079--767162	22	3.8	22	71	12	64	42	0	1	55	1.07
769051--769132	22	3.6	23	69	11	69	41	1	0	57	1.06
771666--771691	3	8.7	3	100	0	52	30	0	0	69	0.89
772317--772364	24	2.0	24	84	12	62	33	0	2	64	1.05
773784--773832	24	2.1	23	85	11	64	42	0	0	57	0.99
773826--773865	21	1.9	21	90	10	64	60	0	0	40	0.97
774030--774091	10	6.5	10	80	10	67	33	1	1	62	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774271--774318	14	3.1	17	71	20	50	52	0	0	47	1.00
774323--774377	22	2.6	22	81	15	64	41	7	0	50	1.30
778960--779003	2	22.5	2	93	4	72	47	0	50	2	1.13
790612--790636	2	12.5	2	100	0	50	48	0	0	52	1.00
793600--793634	3	11.7	3	100	0	70	68	0	31	0	0.90
796974--797054	24	3.1	27	72	15	82	50	19	4	24	1.67
796998--797079	27	3.0	26	82	8	76	51	20	6	21	1.69
797034--797086	27	2.0	27	96	0	97	49	20	9	20	1.77
798713--798758	24	1.9	24	91	8	76	45	28	8	17	1.78
798763--798845	28	3.0	28	96	0	148	49	19	10	20	1.78
800749--800794	21	2.1	22	84	4	58	19	30	19	30	1.97
803340--803385	24	1.9	24	91	8	76	45	28	8	17	1.78
803382--803441	28	2.5	22	70	27	57	53	18	6	21	1.67
803390--803472	28	3.0	28	94	0	139	48	18	12	21	1.80
805721--805763	23	1.9	22	85	4	59	53	0	0	46	1.00
806156--806189	10	3.3	10	87	4	50	70	0	0	29	0.87
806979--807029	20	2.6	20	87	9	70	56	1	0	41	1.10
807368--807393	2	13.0	2	100	0	52	50	0	0	50	1.00
808600--808626	3	9.0	3	100	0	54	66	0	33	0	0.92
812550--812586	3	12.3	3	100	0	74	35	0	0	64	0.94
812710--812741	2	16.0	2	100	0	64	50	0	0	50	1.00
813098--813127	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
814251--814311	29	2.1	29	81	6	70	49	4	1	44	1.33
815361--815451	30	3.1	29	83	10	105	45	2	0	52	1.13
815909--815955	23	2.1	22	84	7	60	34	2	8	55	1.42
819998--820050	27	2.0	27	92	0	88	54	16	3	24	1.59
824531--824602	26	2.7	27	80	2	83	45	18	4	31	1.68
826844--826870	8	3.4	8	100	0	54	88	0	0	11	0.50
829647--829687	11	3.5	11	81	12	55	2	19	0	78	0.87
829647--829701	24	2.3	22	77	17	56	9	20	0	70	1.13
830042--830087	23	2.0	23	82	0	56	19	17	13	50	1.78
830791--830896	45	2.2	48	81	6	128	29	21	30	18	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13