Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold253
Parameters: 2 7 7 80 10 50 1000
Length:  2064896

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1496 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1984872--1984923
25
2.1
24
100
0
86
46
23
15
15
1.83
1991280--1991321
2
21.0
2
95
0
75
50
2
0
47
1.14
1992220--1992282
23
2.7
23
75
18
67
66
0
1
31
1.01
1992239--1992268
15
2.1
15
93
6
53
73
0
0
26
0.84
1992254--1992326
27
2.6
28
77
20
80
63
1
0
35
1.04
1993319--1993354
17
2.1
18
94
5
65
27
0
0
72
0.85
1993547--1993603
11
5.0
12
77
12
66
70
1
1
26
1.07
1993547--1993603
23
2.5
23
85
2
80
70
1
1
26
1.07
1994073--1994155
19
4.3
19
73
15
73
65
0
0
34
0.93
1994088--1994149
32
1.9
32
83
9
81
64
0
0
35
0.94
1994071--1994168
28
3.5
27
73
17
85
64
1
0
34
1.01
1994171--1994208
19
1.9
20
89
10
60
5
10
0
84
0.77
1994648--1994680
12
2.6
13
85
9
50
51
0
6
42
1.26
1995031--1995078
17
2.9
17
84
3
62
31
12
8
47
1.71
1996382--1996415
2
17.0
2
100
0
68
50
0
50
0
1.00
1996566--1996590
6
4.2
6
100
0
50
16
32
0
52
1.44
2003183--2003277
46
2.1
46
97
0
181
36
8
13
41
1.75
2013967--2013996
5
6.0
5
96
0
51
83
0
16
0
0.65
2022327--2022384
17
3.2
17
77
17
55
1
20
0
77
0.86
2022393--2022450
29
2.0
29
93
0
98
31
27
3
37
1.73
2023891--2024014
63
2.0
63
83
0
158
31
20
16
31
1.95
2023184--2025907
907
3.0
907
98
0
5297
33
23
14
28
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2025704--2025827
63
2.0
63
85
0
167
30
20
16
31
1.95
2030465--2030530
14
4.7
14
71
14
55
45
28
1
24
1.62
2030447--2030529
21
3.9
22
75
9
73
44
25
2
27
1.66
2030485--2030543
28
2.1
28
84
6
75
49
25
0
25
1.51
2030562--2030607
22
2.0
22
83
4
56
45
17
2
34
1.61
2030699--2030964
7
37.9
7
70
10
161
44
23
1
30
1.62
2030889--2030934
15
3.1
15
81
6
58
50
19
0
30
1.48
2030981--2031052
32
2.2
33
78
9
76
37
36
4
22
1.73
2031287--2031375
43
2.1
43
86
0
124
41
17
7
32
1.79
2035477--2035571
7
13.6
7
67
12
52
26
43
16
13
1.86
2035480--2035560
14
5.8
14
80
0
90
24
43
18
13
1.86
2035477--2035567
28
3.2
28
75
6
94
25
43
17
13
1.85
2035566--2035719
21
7.7
21
74
15
112
42
29
0
27
1.56
2035583--2035740
14
11.2
14
75
11
126
44
29
0
26
1.55
2035591--2035740
7
21.3
7
70
11
65
44
28
0
26
1.54
2035667--2035708
22
2.0
21
95
4
75
42
28
0
28
1.56
2050041--2050068
3
9.3
3
100
0
56
32
0
0
67
0.91
2050351--2050379
2
14.5
2
100
0
58
51
0
0
48
1.00
2055315--2055386
14
5.3
13
73
14
56
43
16
1
38
1.57
2055311--2055368
14
4.2
14
82
10
66
41
15
0
43
1.47
2056902--2063774
20
342.2
19
73
16
1834
45
40
1
11
1.52
2059481--2059534
9
6.1
9
76
20
60
57
31
1
9
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2063796--2063826
15
2.1
15
93
0
53
51
32
3
12
1.56
2063842--2063922
8
10.4
8
75
21
66
44
35
12
7
1.70
2063842--2063922
15
5.7
15
75
19
77
44
35
12
7
1.70
2063842--2064009
55
3.1
51
75
16
126
45
38
7
8
1.63
2063922--2064035
29
4.0
29
85
6
135
45
44
1
7
1.43
2063938--2063982
22
2.0
23
86
4
65
48
37
2
11
1.51
2056900--2064101
7
1049.1
7
77
15
6332
45
41
2
11
1.53
2064007--2064245
7
36.8
6
81
12
171
37
58
3
0
1.14
2063998--2064470
14
35.9
13
74
14
215
37
53
5
4
1.43
2064268--2064317
7
7.4
7
80
14
52
26
56
14
4
1.56
2064313--2064483
7
24.6
7
74
18
101
43
45
1
8
1.45
2064307--2064507
14
15.0
13
73
17
130
42
45
2
9
1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!