genome.fa.s253.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold253
Parameters: 2 7 7 80 10 50 1000
Length:  2064896

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
830929--831912	32	31.8	32	88	3	1336	18	18	32	30	1.95
831018--831903	399	2.2	398	99	0	1738	17	18	33	30	1.95
831895--832496	27	22.0	27	93	1	1024	27	14	35	22	1.93
831895--832496	82	7.3	81	94	1	1024	27	14	35	22	1.93
832455--832548	46	2.0	46	95	0	170	36	10	28	24	1.89
832516--832573	30	1.9	31	89	3	91	32	15	27	24	1.95
839963--839993	2	15.5	2	93	0	53	51	3	0	45	1.17
840377--840417	11	3.5	11	81	12	55	2	19	0	78	0.87
840377--840431	24	2.3	22	77	17	56	9	20	0	70	1.13
840772--840819	24	2.0	24	83	0	60	18	16	12	52	1.75
843200--843249	3	16.7	3	100	0	100	68	0	32	0	0.90
849496--849527	2	16.0	2	100	0	64	50	0	0	50	1.00
850029--850114	31	2.7	31	92	1	145	47	0	1	51	1.08
850105--850165	11	5.5	11	74	11	54	62	0	0	37	0.96
850100--850167	22	3.0	23	77	12	70	60	0	0	39	0.97
850030--850175	31	5.1	29	75	18	114	51	0	0	47	1.05
860342--860399	18	3.4	18	71	26	54	41	0	1	56	1.09
860900--860945	23	2.0	23	83	8	58	67	0	0	32	0.91
863857--863906	25	2.0	26	84	4	66	52	2	0	46	1.12
864282--864322	19	2.3	17	84	12	55	53	0	0	46	1.00
864314--864348	7	5.0	7	100	0	70	57	0	0	42	0.99
864882--864915	16	2.1	17	88	5	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
866066--866122	30	1.9	30	88	0	87	42	1	7	49	1.40
866405--866466	27	2.2	27	78	16	63	35	0	1	62	1.05
868712--868763	22	2.3	23	78	21	56	40	0	1	57	1.10
870780--870815	19	2.0	18	89	10	56	52	0	2	44	1.15
871174--871251	27	2.9	27	78	16	97	42	1	0	56	1.07
871192--871237	14	3.4	14	78	6	58	45	0	0	54	0.99
871161--871319	31	5.0	31	69	11	92	37	1	0	61	1.04
871263--871338	32	2.4	32	78	10	84	36	1	0	61	1.04
871535--871583	22	2.3	23	86	10	68	40	0	6	53	1.26
877292--877324	16	2.1	16	94	0	57	30	6	15	48	1.69
883360--883428	18	3.9	18	73	3	50	49	1	0	49	1.09
884536--884621	37	2.4	36	80	5	95	44	1	0	54	1.07
884546--884621	35	2.2	34	81	11	84	44	1	0	53	1.08
884963--885004	20	2.0	20	82	13	50	47	9	7	35	1.64
887257--887346	21	4.2	21	72	14	76	48	1	0	50	1.08
890788--890875	43	2.0	43	97	0	167	27	12	4	55	1.56
892118--892156	21	1.9	20	84	5	51	64	0	0	35	0.94
896421--896487	11	6.6	11	80	17	51	40	0	0	59	0.97
896421--896566	13	10.3	15	65	22	50	40	0	0	58	1.08
896420--896490	29	2.4	30	79	13	85	40	0	0	59	0.98
896513--896568	21	2.6	21	78	10	60	35	1	0	62	1.06
896516--896600	34	2.7	31	77	15	77	37	2	1	58	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
896585--896665	11	7.6	11	69	23	50	60	0	0	39	0.97
896588--896683	17	5.4	18	73	17	67	63	0	0	36	0.95
896732--896818	20	4.2	20	71	22	65	65	0	0	34	0.93
896751--896823	20	3.6	20	76	12	69	64	0	0	35	0.94
896733--896810	24	3.4	23	72	24	67	62	0	0	37	0.95
897717--897916	70	3.1	64	84	12	280	19	8	22	49	1.75
898976--899072	32	3.2	32	61	31	75	35	14	18	31	1.91
898968--899087	60	2.0	60	100	0	240	35	15	18	31	1.91
902339--902370	16	2.1	15	94	5	55	59	0	0	40	0.97
904551--904593	13	3.3	13	75	12	52	65	2	0	32	1.06
908196--908238	12	3.6	12	81	9	52	58	0	0	41	0.98
909397--909422	5	5.2	5	100	0	52	80	0	0	19	0.71
909906--909947	21	2.0	21	81	9	50	47	0	2	50	1.14
909939--909978	20	2.0	20	85	4	55	50	2	0	47	1.14
910348--910379	2	16.0	2	100	0	64	50	0	0	50	1.00
913631--913698	22	2.9	24	72	16	63	35	0	2	61	1.11
913812--913855	2	22.0	2	90	0	70	50	4	0	45	1.22
914018--914042	2	12.5	2	100	0	50	52	0	0	48	1.00
914042--914074	2	16.5	2	100	0	66	51	0	48	0	1.00
914407--914453	24	1.9	24	86	4	67	65	0	2	31	1.04
927388--927418	2	16.0	2	93	6	55	51	0	0	48	1.00
928577--928614	2	20.0	2	89	10	62	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
934311--934353	18	2.4	18	84	0	50	60	0	0	39	0.97
934371--934405	17	2.1	17	88	0	52	48	5	0	45	1.26
934892--934923	13	2.5	13	95	5	57	59	0	0	40	0.97
934920--935007	34	2.6	34	75	8	90	44	3	0	52	1.18
934907--934975	17	4.1	17	72	9	52	44	1	0	53	1.09
935898--935953	17	3.1	17	80	15	60	42	5	0	51	1.24
935897--935960	9	6.9	9	73	25	53	42	4	0	53	1.22
935925--935966	21	2.0	21	86	9	59	47	2	0	50	1.14
936084--936146	29	2.2	29	88	0	90	50	0	3	46	1.17
936546--936658	58	1.9	59	91	5	185	30	8	22	38	1.85
936667--936693	2	13.5	2	100	0	54	48	0	0	51	1.00
936695--936724	15	2.0	15	93	0	51	63	0	0	36	0.95
936690--936733	22	2.0	22	82	8	54	63	0	0	36	0.95
936745--936795	22	2.3	22	80	6	59	62	0	0	37	0.95
936774--936821	18	2.5	19	78	18	55	66	0	0	33	0.92
936791--936851	20	3.2	20	78	17	60	63	0	0	36	0.94
936702--936847	34	4.7	32	71	18	87	63	1	0	34	1.03
942262--942302	18	2.3	18	95	0	73	34	4	2	58	1.32
942495--942542	9	4.8	10	78	17	55	68	0	0	31	0.90
942963--943036	29	2.5	28	77	12	78	55	1	1	41	1.17
948151--948175	13	1.9	13	100	0	50	60	0	0	40	0.97
948239--948278	16	2.6	16	84	4	55	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948323--948364	12	3.2	13	80	19	52	45	2	2	50	1.27
948725--948794	16	4.4	16	79	0	77	55	4	2	37	1.34
948720--948794	32	2.3	32	86	0	105	54	6	2	36	1.41
948949--948986	16	2.4	16	86	8	51	60	2	2	34	1.24
949692--949777	32	2.7	31	79	12	77	40	2	1	55	1.20
950983--951034	15	3.5	16	73	21	51	57	0	1	40	1.10
956780--956825	17	2.8	17	93	3	76	63	0	0	36	0.95
958625--958663	18	2.2	18	90	4	62	35	0	0	64	0.94
958656--958700	17	2.6	17	83	10	56	48	2	0	48	1.13
959557--959601	17	2.6	18	82	7	56	48	0	6	44	1.29
959821--959874	22	2.5	21	77	13	65	59	1	1	37	1.19
960300--960340	19	2.3	17	87	8	55	36	0	2	60	1.10
960315--960616	168	1.8	167	91	2	507	36	7	4	52	1.49
966534--966593	32	1.9	31	86	3	84	71	0	0	28	0.86
966543--966602	21	3.0	20	75	13	61	70	0	0	30	0.88
966567--966618	25	2.1	25	85	7	70	63	0	1	34	1.06
968069--968138	5	13.8	5	75	8	52	51	0	1	47	1.09
968068--968115	15	3.1	15	85	5	69	43	0	2	54	1.12
968070--968140	25	2.8	24	87	6	88	50	0	1	47	1.09
968580--968628	26	2.0	24	88	8	71	44	0	0	55	0.99
969808--969849	2	21.0	2	100	0	84	0	50	0	50	1.00
971196--971499	153	2.0	153	100	0	608	22	15	22	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
974835--974872	2	19.0	2	100	0	76	50	0	0	50	1.00
974941--975014	32	2.2	34	80	4	89	52	1	0	45	1.09
975373--975407	14	2.5	13	86	13	52	42	2	0	54	1.15
976046--976089	14	3.1	14	84	15	56	54	0	4	40	1.21
976077--976122	21	2.2	21	88	7	67	47	0	2	50	1.13
976679--976749	29	2.4	29	73	13	74	54	0	1	43	1.08
976688--976732	15	3.0	15	78	21	58	51	0	2	46	1.13
981348--981375	2	14.0	2	100	0	56	50	0	0	50	1.00
987879--987923	17	2.6	18	82	10	58	64	0	4	31	1.13
987864--987932	19	3.7	19	79	12	72	65	1	2	30	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13