genome.fa.s269.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold269
Parameters: 2 7 7 80 10 50 1000
Length:  1389591

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 840 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
851687--851725	21	1.9	20	84	5	51	23	25	0	51	1.49
851760--851815	19	2.9	18	84	10	58	19	33	0	46	1.50
851688--851884	92	2.2	90	91	1	313	26	25	1	45	1.62
858163--858266	52	2.0	52	94	0	181	28	18	17	35	1.93
860768--860804	13	2.8	13	95	0	65	32	16	18	32	1.93
862117--866805	673	7.0	673	96	0	8571	33	19	12	35	1.89
868905--868936	15	2.2	14	94	5	55	28	12	6	53	1.62
874163--883432	475	19.7	474	80	5	10013	31	18	14	35	1.90
884911--884938	14	2.0	14	100	0	56	42	28	7	21	1.79
885178--895112	475	20.9	475	82	3	10561	36	13	18	31	1.90
885178--895115	951	10.5	949	82	3	10632	36	13	18	31	1.90
895139--903019	475	16.6	475	81	4	8266	35	14	18	31	1.91
903700--903874	70	2.5	70	95	2	316	32	17	14	36	1.89
903862--903887	13	2.0	13	100	0	52	30	15	15	38	1.88
903842--903906	33	2.0	33	90	6	105	27	15	16	40	1.89
903959--904013	20	2.8	20	88	5	76	29	16	16	38	1.90
906467--906505	13	3.0	13	96	0	69	35	15	17	30	1.91
912652--912710	20	3.0	19	87	7	82	25	13	20	40	1.89
913079--915397	476	4.9	476	86	2	3229	35	13	18	32	1.90
913079--915391	953	2.4	949	88	2	3550	35	13	18	32	1.90
915090--915619	158	3.4	157	71	9	412	34	15	16	32	1.91
915067--915708	317	2.0	317	87	1	930	36	14	16	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
915067--915548	159	3.0	156	70	11	415	36	14	16	31	1.89
916268--916332	33	2.0	33	84	6	87	40	16	13	29	1.88
922456--922520	13	5.0	13	84	0	85	33	16	12	36	1.87
922463--922520	26	2.2	26	93	0	98	36	18	12	32	1.88
922638--922684	21	2.3	21	79	20	55	31	23	4	40	1.74
925086--925111	13	2.0	13	100	0	52	38	15	15	30	1.88
925067--925129	33	1.9	33	87	6	92	41	15	14	28	1.87
926541--926686	52	2.8	52	87	4	213	28	17	17	36	1.93
927212--927381	52	3.2	52	80	5	162	37	13	23	25	1.92
927322--927448	67	1.9	68	85	4	177	39	11	23	25	1.88
927505--927643	43	3.1	43	81	11	188	33	17	23	25	1.96
927452--927643	92	2.0	94	90	4	298	34	17	22	25	1.95
927461--927655	49	4.0	49	83	9	249	35	17	22	24	1.95
927664--927966	58	5.2	59	83	8	361	20	14	33	31	1.93
927664--927966	89	3.5	88	83	3	362	20	14	33	31	1.93
927664--927966	29	10.3	29	81	6	326	20	14	33	31	1.93
929408--929482	22	3.5	20	75	16	71	0	4	14	81	0.83
929408--929488	25	3.2	25	77	11	85	0	3	13	82	0.79
929408--929485	21	3.5	21	79	16	86	0	3	14	82	0.81
938332--938457	52	2.4	52	97	0	234	27	18	19	34	1.95
938335--938477	52	2.7	51	91	4	216	30	18	19	32	1.96
938487--938576	33	2.7	33	94	0	162	25	11	17	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
938664--942943	476	9.0	476	87	1	6097	35	13	17	32	1.90
938772--942802	158	25.4	157	64	15	763	35	14	17	32	1.90
943058--945361	476	4.8	477	86	2	3197	36	13	17	31	1.90
945354--954559	950	9.7	949	80	4	9494	35	13	18	31	1.90
950795--950825	14	2.2	14	100	0	62	38	6	16	38	1.74
955503--956072	286	2.0	286	86	2	786	31	17	14	36	1.90
956730--991771	476	73.1	476	74	8	22536	30	19	13	35	1.91
956730--968923	475	25.7	475	81	4	12697	31	18	13	36	1.90
969014--969651	49	13.1	48	77	13	560	25	23	16	34	1.95
969016--969478	92	5.0	92	90	5	661	26	23	17	32	1.96
969016--969473	141	3.3	135	84	7	550	26	23	17	32	1.97
969403--969468	22	3.0	22	66	30	52	27	19	19	33	1.96
969432--969764	58	6.1	55	75	10	263	23	24	14	37	1.92
970231--970680	49	9.7	47	84	9	554	26	24	17	32	1.97
970233--970680	92	4.9	92	91	3	667	26	24	17	32	1.97
970233--970680	141	3.2	139	85	8	594	26	24	17	32	1.97
970892--970916	13	1.9	13	100	0	50	36	16	16	32	1.90
970872--970937	32	2.0	33	97	2	125	34	12	18	34	1.88
970978--971002	13	1.9	13	100	0	50	32	16	16	36	1.90
970991--971135	52	2.8	50	82	6	182	36	18	15	28	1.92
972869--991771	952	19.9	952	97	0	34714	30	19	13	36	1.90
990931--992608	838	2.0	837	95	0	3054	30	19	13	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
991920--1009574	476	37.1	472	80	3	19570	30	19	13	36	1.90
991769--1009576	952	18.7	952	96	0	32540	30	19	13	36	1.90
1009249--1009901	330	2.0	330	95	0	1191	30	18	13	37	1.90
1009605--1015235	476	11.8	475	80	3	6193	31	19	13	36	1.90
1009579--1015235	952	5.9	951	95	0	10179	31	19	13	36	1.90
1015248--1017290	475	4.3	476	79	4	2113	31	18	14	36	1.90
1015248--1017290	950	2.2	950	87	2	2876	31	18	14	36	1.90
1016670--1018559	634	3.0	633	87	2	2593	32	18	13	35	1.90
1017072--1018112	159	6.6	159	70	10	620	31	17	14	35	1.91
1019994--1020370	159	2.4	158	81	5	402	31	18	15	34	1.92
1020049--1020372	159	2.0	158	85	2	436	30	17	16	35	1.92
1021453--1021478	13	2.0	13	100	0	52	30	15	15	38	1.88
1022123--1022213	39	2.3	39	79	11	105	32	21	6	38	1.80
1026956--1028115	475	2.4	472	83	3	1457	32	18	14	35	1.90
1027896--1028274	159	2.4	159	82	4	401	31	18	15	34	1.92
1027951--1028292	159	2.2	158	85	1	443	31	17	14	36	1.90
1026956--1028274	475	2.8	469	78	8	1339	31	18	14	35	1.91
1027519--1028731	634	1.9	632	85	2	1666	32	18	13	35	1.90
1029495--1029826	159	2.1	159	86	3	458	30	18	16	34	1.93
1029678--1031250	475	3.3	470	81	4	1736	31	18	14	35	1.90
1031077--1031415	159	2.1	155	83	4	437	30	16	15	36	1.91
1031258--1032037	408	1.9	409	83	3	1007	30	17	14	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1031680--1032766	474	2.3	471	79	4	1191	32	17	14	35	1.90
1032616--1032946	159	2.1	158	80	5	391	29	16	16	37	1.91
1033177--1034274	473	2.3	471	80	6	1227	32	17	14	35	1.90
1034126--1034441	159	2.0	158	85	4	431	30	17	16	35	1.92
1034276--1035057	407	1.9	408	85	2	1090	30	18	14	36	1.91
1035793--1040056	476	9.0	474	80	6	4109	31	17	14	36	1.90
1037215--1040056	475	6.0	475	82	4	3157	30	17	14	36	1.90
1039414--1041351	642	3.0	643	83	4	2400	30	17	15	36	1.91
1040711--1041826	476	2.4	473	84	4	1418	30	18	14	36	1.91
1041654--1042001	174	2.0	174	84	2	448	30	20	14	34	1.92
1043352--1043405	20	2.7	20	91	5	83	35	18	12	33	1.89
1043473--1043500	13	2.2	13	100	0	56	42	14	14	28	1.84
1044067--1044125	31	1.9	31	100	0	118	37	16	10	35	1.83
1044124--1044165	22	1.9	22	90	0	66	21	28	4	45	1.72
1052138--1052200	33	1.9	33	83	6	83	31	17	14	36	1.90
1052255--1052281	13	2.1	13	100	0	54	40	14	14	29	1.86
1053533--1054387	469	1.8	473	88	3	1314	30	18	13	37	1.90
1054230--1054676	229	2.0	229	84	1	592	30	19	12	37	1.89
1054597--1058035	475	7.3	447	74	12	2056	30	18	14	36	1.91
1055045--1057973	475	6.1	475	79	6	2879	30	18	14	36	1.91
1055930--1055997	34	2.0	34	100	0	136	17	17	8	55	1.66
1055930--1055987	19	3.3	19	67	18	61	18	17	10	53	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1055932--1056010	34	2.3	34	91	4	115	22	18	8	49	1.75
1055957--1057967	949	2.1	949	81	4	2299	30	18	14	37	1.90
1057716--1058295	309	1.9	308	83	6	713	31	19	14	34	1.92
1058574--1058611	20	2.0	20	94	5	69	28	21	5	44	1.73
1058127--1059067	489	1.9	490	81	4	1146	30	19	14	36	1.91
1057984--1060360	477	5.0	471	75	10	1907	30	18	14	35	1.91
1059590--1061089	777	1.9	782	83	5	1920	30	18	14	36	1.90
1060340--1062843	475	5.3	475	80	5	2407	30	18	13	37	1.90
1063822--1064022	79	2.6	78	83	4	226	29	16	28	25	1.97
1063974--1064045	28	2.6	28	86	0	90	23	20	34	20	1.96

Tables:   1   2   3   4   5   6   7