Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold283
Parameters: 2 7 7 80 10 50 1000
Length:  2945114

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  4  of  15  ( 1700 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
488492--488531
20
2.0
20
90
0
62
40
0
0
60
0.97
488452--488536
22
4.0
22
69
14
61
51
1
0
47
1.08
488497--488539
20
2.1
20
86
4
59
46
0
0
53
1.00
488567--488608
19
2.2
20
86
4
59
52
0
2
45
1.13
493814--493869
29
2.0
29
82
10
71
46
0
0
53
1.00
493892--493957
18
3.5
19
78
11
57
53
0
0
46
1.00
494182--494210
2
14.5
2
100
0
58
51
0
0
48
1.00
496369--496418
2
25.0
2
93
0
82
50
2
2
46
1.24
496475--496528
28
1.9
28
92
0
90
16
9
20
53
1.70
502748--502784
2
18.5
2
88
0
56
48
0
2
48
1.15
504209--504243
9
3.9
9
92
0
52
40
37
0
22
1.55
504907--504956
24
2.1
24
92
0
82
34
2
22
42
1.65
505863--505904
22
1.9
21
85
9
57
50
0
0
50
1.00
505986--506015
11
2.7
11
89
0
51
53
0
0
46
1.00
505978--506015
6
6.5
6
82
17
53
52
0
0
47
1.00
507136--507185
26
1.9
27
88
8
77
42
0
0
58
0.98
507694--507754
28
2.2
28
85
5
79
63
1
3
31
1.20
510669--510698
2
15.0
2
92
0
51
50
3
0
46
1.18
514902--514952
21
2.4
21
80
6
59
7
31
5
54
1.53
514936--514961
3
8.7
3
100
0
52
0
34
0
65
0.93
519898--519923
3
8.7
3
100
0
52
34
0
0
65
0.93
520871--520926
28
2.1
28
87
9
82
26
0
5
67
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
520876--520937
28
2.3
25
78
13
61
32
0
4
62
1.16
525508--525546
19
2.1
18
86
13
53
10
7
0
82
0.86
526126--526173
24
2.0
24
87
0
69
16
52
20
10
1.73
526621--526885
105
2.5
106
87
3
401
43
18
6
31
1.74
529026--529109
32
2.6
32
80
10
100
23
11
22
41
1.87
529022--529098
16
4.8
16
74
6
66
22
11
22
44
1.85
529053--529120
32
2.1
32
83
5
84
17
11
27
42
1.84
530232--530286
12
4.2
13
73
13
51
54
0
0
45
0.99
530216--530289
36
2.1
35
82
7
87
50
0
0
50
1.00
532024--532055
14
2.1
16
88
11
50
25
0
12
62
1.30
532089--532137
16
3.1
16
82
8
55
28
14
16
40
1.87
532186--532253
15
4.8
15
71
23
58
47
1
0
51
1.09
532218--532256
20
1.9
21
94
5
71
56
0
0
43
0.99
532595--532627
3
11.0
3
93
0
57
0
30
0
69
0.88
535230--535274
2
22.5
2
100
0
90
51
0
0
48
1.00
535465--535495
2
15.5
2
100
0
62
51
0
0
48
1.00
536517--536699
34
5.4
34
87
0
251
26
7
26
39
1.82
541110--541294
34
5.5
34
88
0
264
25
7
26
40
1.82
543937--543979
2
21.5
2
100
0
86
48
0
0
51
1.00
544239--544268
12
2.4
13
94
5
53
86
3
10
0
0.67
547021--547120
50
2.0
50
96
0
182
45
11
11
33
1.75
548046--548096
16
3.2
16
73
13
52
43
0
1
54
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
548097--548178
29
2.8
30
74
10
80
51
0
0
48
1.00
548085--548204
59
2.1
58
81
10
138
54
0
0
45
0.99
548173--548212
20
2.0
21
90
9
66
62
0
0
37
0.95
548684--548736
23
2.3
22
78
15
63
28
0
0
71
0.86
548702--548785
44
1.9
44
85
9
118
41
0
0
58
0.98
548696--548794
44
2.2
44
75
7
103
38
1
0
60
1.04
548767--548815
19
2.6
18
81
9
62
36
2
0
61
1.08
548767--548820
18
2.8
19
78
16
58
37
1
0
61
1.07
557856--557931
27
2.8
27
75
18
77
65
0
0
34
0.93
557886--557928
16
2.8
16
86
10
54
67
0
0
32
0.91
557856--557932
6
13.7
6
71
23
53
64
0
0
35
0.93
557918--557986
21
3.3
21
69
20
56
56
1
0
42
1.08
557858--557950
36
2.6
37
80
11
104
64
0
0
35
0.94
557907--557987
41
2.0
40
81
11
94
59
1
0
39
1.05
557919--557991
17
3.8
19
72
19
62
54
1
0
43
1.08
571036--571095
19
3.2
19
74
23
63
38
0
0
61
0.96
571981--572025
20
2.2
20
80
7
56
55
2
0
42
1.12
573073--573111
20
2.0
20
85
10
53
43
0
0
56
0.99
573061--573140
27
2.9
27
78
16
74
46
0
0
53
1.00
573304--573332
5
5.8
5
100
0
58
37
0
0
62
0.96
573388--573434
15
3.1
15
79
14
51
63
0
0
36
0.94
580242--580276
11
3.1
11
88
8
52
60
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
580240--580279
21
1.9
21
84
0
53
55
0
0
45
0.99
580245--580276
12
2.6
12
95
5
55
56
0
0
43
0.99
580373--580422
15
3.6
14
76
15
50
0
24
0
76
0.80
580511--580541
15
2.0
16
93
6
55
32
0
3
64
1.09
580606--580643
14
2.5
16
87
8
53
71
0
0
28
0.87
581390--581585
63
3.0
64
90
4
304
35
2
3
58
1.27
589390--589453
28
2.3
27
84
7
76
25
1
15
57
1.47
589461--589516
22
2.6
21
82
2
67
35
1
5
57
1.32
589697--589750
21
2.4
22
81
12
65
48
0
3
48
1.19
589705--589756
21
2.6
21
84
6
63
50
0
3
46
1.20
589771--589830
21
2.9
21
83
14
79
45
0
0
55
0.99
589763--589843
42
1.9
42
82
12
103
44
1
0
54
1.08
589793--589864
21
3.5
21
76
19
64
43
0
0
56
0.99
589697--589864
81
2.0
81
81
15
195
45
1
1
52
1.16
589822--589863
20
2.2
19
87
12
59
42
0
0
57
0.99
589761--589887
50
2.5
52
77
13
136
44
2
0
52
1.19
602656--602696
3
13.7
3
100
0
82
31
0
0
68
0.90
610583--610610
3
9.3
3
100
0
56
32
0
0
67
0.91
610920--610983
27
2.4
26
80
17
69
56
1
1
40
1.18
611527--611551
2
12.5
2
100
0
50
48
0
0
52
1.00
614181--614233
17
3.1
16
73
10
52
56
0
0
43
0.99
614512--614566
17
3.2
16
77
12
56
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
614518--614572
16
3.2
16
76
23
58
52
0
0
47
1.00
619901--619962
18
3.2
19
76
17
65
46
1
1
50
1.20
621603--621640
2
18.5
2
94
5
67
50
0
2
47
1.15
622024--622069
3
15.0
3
86
13
67
65
0
2
32
1.05
623779--623821
19
2.3
19
80
8
52
55
0
0
44
0.99
627499--627523
11
2.3
11
100
0
50
36
0
0
64
0.94
630514--630552
17
2.4
17
86
4
53
46
2
0
51
1.14
630701--630740
20
2.0
20
100
0
80
70
0
0
30
0.88
630706--630741
10
3.6
10
84
0
54
72
0
0
27
0.85
634350--634423
8
8.1
9
75
18
64
66
1
0
32
1.00
634339--634407
31
2.2
32
82
12
92
63
1
0
34
1.03
634383--634423
17
2.4
17
88
8
57
73
0
0
26
0.84
634493--634537
18
2.5
18
82
7
56
44
2
2
51
1.26
634532--634571
6
6.1
7
85
8
50
65
0
0
35
0.93
634540--634624
6
14.5
6
70
13
52
60
1
1
37
1.12
634548--634624
12
6.7
12
75
19
83
58
1
1
38
1.15
634585--634640
25
2.3
24
87
3
76
62
0
0
37
0.95
635165--635233
19
3.5
20
72
21
56
34
0
4
60
1.16
639604--639648
2
22.5
2
86
0
63
44
2
51
2
1.26
639762--639908
23
6.3
23
67
18
63
55
0
0
44
0.99
639776--639824
14
3.5
14
83
5
55
57
0
0
42
0.99
639760--639891
34
3.9
36
74
15
118
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
639805--639855
20
2.7
18
75
6
57
54
0
0
45
0.99
639864--639903
21
1.9
21
90
10
64
60
0
0
40
0.97
639962--639998
18
2.0
19
89
5
58
56
2
0
40
1.13
640216--640241
3
8.7
3
100
0
52
0
30
0
69
0.89
640750--640824
17
4.5
17
71
19
59
54
0
0
45
0.99
642178--642231
28
2.0
28
85
7
76
35
0
0
64
0.94
642178--642223
14
3.4
14
79
8
51
36
0
0
63
0.95
642710--642764
21
2.5
22
77
13
60
54
0
3
41
1.18
643218--643265
13
3.7
13
75
10
53
45
2
0
52
1.12
643228--643293
36
1.9
34
85
11
91
37
4
1
56
1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15