genome.fa.s283.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold283
Parameters: 2 7 7 80 10 50 1000
Length:  2945114

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  5  of  15  ( 1700 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646009--646159	75	2.0	75	96	0	275	47	15	16	19	1.82
650401--650442	22	1.9	22	85	9	59	73	0	26	0	0.83
662554--662590	3	12.3	3	100	0	74	67	0	0	32	0.91
666130--666181	22	2.3	23	80	9	63	63	5	0	30	1.18
668349--668398	14	3.6	14	81	15	59	60	0	0	40	0.97
668379--668429	21	2.4	21	90	6	77	64	0	0	35	0.94
668379--668429	10	4.9	10	81	13	59	64	0	0	35	0.94
669266--669322	24	2.4	24	80	13	66	42	5	0	52	1.24
669793--669869	21	3.4	22	68	15	59	45	0	2	51	1.14
669821--669870	22	2.3	22	78	0	55	48	0	2	50	1.12
670189--670251	11	5.3	12	75	20	53	68	0	1	30	0.99
670211--670272	19	3.1	19	77	17	63	61	0	0	38	0.96
670225--670278	28	1.9	28	85	7	74	59	0	0	40	0.98
670443--670485	22	2.0	22	90	0	68	55	2	0	41	1.12
670908--670966	20	3.0	20	80	9	68	45	0	0	54	0.99
670908--670946	19	2.0	20	90	5	62	43	0	0	56	0.99
670911--670973	20	3.3	19	78	10	65	44	0	0	55	0.99
675591--675617	4	6.8	4	100	0	54	74	0	25	0	0.83
676979--677012	18	2.0	18	88	11	54	41	11	5	41	1.66
677065--677208	30	4.6	31	75	7	123	44	2	1	51	1.24
678847--678907	30	2.0	30	90	0	95	29	8	18	44	1.78
678921--678972	24	2.2	24	83	13	63	55	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686157--686209	26	2.0	26	85	7	72	7	22	3	66	1.34
687597--687682	41	2.2	39	78	4	91	47	1	0	51	1.08
687670--687709	17	2.3	18	87	12	57	40	5	0	55	1.22
689543--689570	2	14.0	2	100	0	56	50	0	0	50	1.00
690243--690302	30	2.0	30	83	6	77	55	3	3	38	1.33
692535--692563	2	14.5	2	100	0	58	48	0	0	51	1.00
695809--696041	50	4.6	50	86	3	308	30	18	19	32	1.95
700448--700680	50	4.6	50	91	1	367	29	20	20	30	1.97
700448--700680	100	2.3	101	94	0	405	29	20	20	30	1.97
701720--701765	21	2.1	21	84	15	58	58	0	0	41	0.98
702404--702460	21	2.7	22	78	8	64	54	0	0	45	0.99
710222--710264	21	2.2	20	87	8	61	60	0	0	39	0.97
710736--710773	2	19.0	2	100	0	76	50	0	0	50	1.00
711699--711723	5	5.0	5	100	0	50	40	0	0	60	0.97
712792--712922	69	1.9	70	95	1	237	49	3	1	45	1.26
714257--714299	11	4.0	11	90	3	61	65	0	0	34	0.93
721240--721292	23	2.3	24	74	9	56	50	0	1	47	1.12
721272--721381	35	3.1	34	68	19	91	38	1	1	58	1.20
721253--721412	70	2.3	70	92	2	261	40	1	1	56	1.15
721456--721509	16	3.5	15	77	7	54	33	1	0	64	1.04
721531--721582	19	2.8	19	83	11	56	61	1	0	36	1.07
722775--722827	21	2.5	23	85	14	71	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722771--722832	30	2.0	31	82	14	76	56	0	0	43	0.99
723572--723609	18	2.1	19	90	5	60	68	5	0	26	1.11
724330--724363	16	2.1	17	88	5	52	32	0	2	64	1.08
724327--724363	17	2.2	17	90	9	58	32	0	2	64	1.07
724381--724453	20	3.6	21	70	17	55	43	0	2	53	1.15
724898--724935	18	2.2	18	86	9	53	28	2	0	68	1.03
724949--724981	14	2.4	14	90	5	50	51	0	0	48	1.00
730052--730083	7	4.7	7	92	7	57	53	0	0	46	1.00
730052--730083	13	2.4	14	94	5	57	53	0	0	46	1.00
740084--740117	17	2.1	16	89	10	52	41	2	2	52	1.31
745842--745881	10	3.7	10	84	15	53	32	2	0	65	1.06
752249--752290	16	2.6	16	78	14	50	59	0	0	40	0.97
752262--752308	21	2.2	21	92	0	76	59	0	0	40	0.97
752370--752428	30	2.0	30	83	6	75	33	0	0	66	0.92
757654--757684	2	15.5	2	100	0	62	0	48	0	51	1.00
758387--758429	21	2.0	22	90	4	70	58	6	11	23	1.57
761445--761500	20	2.8	21	81	18	82	60	0	0	39	0.97
762402--762465	35	1.9	32	81	15	76	37	4	3	54	1.37
770764--770822	25	2.4	25	97	0	109	22	25	16	35	1.95
777606--777698	30	3.1	30	90	0	141	27	11	24	35	1.91
777932--778032	31	3.3	31	73	5	114	20	18	12	47	1.82
777931--778056	62	2.0	62	93	0	216	21	15	14	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
779923--780007	42	2.0	42	95	0	152	29	28	16	25	1.97
781972--782051	30	2.7	30	92	0	133	30	13	22	33	1.93
782287--782329	2	21.5	2	100	0	86	0	48	0	51	1.00
782691--782721	2	15.5	2	93	0	53	48	3	48	0	1.17
785941--785992	22	2.4	22	80	3	70	50	0	0	50	1.00
785955--785987	16	2.1	16	94	5	59	42	0	0	57	0.98
790017--790065	19	2.5	19	78	15	55	61	2	0	36	1.08
793187--793217	2	15.5	2	93	0	53	48	3	0	48	1.17
793355--793389	2	17.5	2	100	0	70	48	0	0	51	1.00
799516--799602	29	3.2	28	67	14	74	57	2	0	40	1.11
809123--809151	2	14.5	2	100	0	58	48	0	0	51	1.00
817794--817850	19	3.0	18	82	10	60	43	3	1	50	1.29
821651--821680	15	2.0	15	93	0	51	0	26	30	43	1.55
823282--823369	27	3.3	26	73	10	70	18	34	2	45	1.62
827244--827300	29	1.9	30	82	10	73	47	1	0	50	1.11
827272--827338	19	3.4	19	68	8	53	50	0	0	49	1.00
827302--827368	19	3.6	19	68	22	52	47	1	1	49	1.19
828504--828545	17	2.5	17	88	0	57	59	2	0	38	1.10
829464--829512	19	2.7	18	81	6	62	57	0	0	42	0.99
830021--830084	32	1.9	33	90	6	103	35	7	17	39	1.78
831230--831308	5	14.8	5	71	19	54	54	0	2	43	1.14
831230--831308	18	4.8	17	75	18	62	54	0	2	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
831381--831413	17	2.0	17	88	5	50	66	0	0	33	0.92
831887--831942	25	2.2	26	81	12	71	57	1	1	39	1.20
831894--831942	25	2.0	25	88	8	73	57	2	2	38	1.22
833038--833063	8	3.2	8	100	0	52	0	38	0	61	0.96
833596--833666	21	3.5	21	66	11	58	43	1	18	36	1.59
836967--837021	21	2.6	21	80	5	67	36	3	21	38	1.71
846547--846579	2	16.5	2	100	0	66	51	0	0	48	1.00
846971--847064	46	2.1	46	95	2	172	47	2	7	42	1.43
847310--847348	2	19.5	2	94	0	69	48	2	0	48	1.15
848257--848289	2	16.5	2	93	0	57	51	0	48	0	1.00
849197--849235	20	2.0	20	85	10	53	43	2	0	53	1.14
850290--850317	3	9.3	3	100	0	56	35	0	0	64	0.94
850742--850790	19	2.6	19	73	0	53	51	6	0	42	1.27
850788--850829	19	2.3	18	88	8	66	30	0	0	69	0.89
850788--850839	9	5.7	9	81	4	59	30	0	0	69	0.89
850788--850841	28	1.9	28	85	7	74	33	0	0	66	0.92
851146--851179	6	5.7	6	85	0	50	47	17	17	17	1.84
860327--860388	25	2.6	24	80	14	67	58	0	0	41	0.98
860754--860831	31	2.6	29	77	15	79	39	0	2	57	1.12
860811--860874	31	2.2	30	83	8	78	34	1	4	59	1.28
868947--869008	19	3.2	19	77	6	61	51	0	1	46	1.10
868937--869030	39	2.4	39	79	10	111	51	0	2	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
868963--869020	20	3.0	19	78	11	64	58	0	1	39	1.08
876544--876577	12	2.8	12	86	0	50	20	47	8	23	1.78
876814--876933	25	4.7	25	70	20	81	40	0	0	59	0.98
876806--876894	18	5.4	17	73	22	66	44	0	0	55	0.99
876804--876876	16	4.5	16	74	16	53	46	0	0	53	1.00
876852--876930	21	3.4	25	70	22	73	37	0	0	62	0.96
876835--876935	43	2.3	43	77	13	107	39	0	0	60	0.97
876884--876940	27	2.2	26	87	3	78	33	0	0	66	0.92
877021--877106	41	2.1	42	78	6	95	51	3	5	39	1.43
877720--877744	2	12.5	2	100	0	50	0	48	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15