genome.fa.s283.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold283
Parameters: 2 7 7 80 10 50 1000
Length:  2945114

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  6  of  15  ( 1700 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
877774--877818	16	2.9	16	96	3	83	60	0	0	40	0.97
877998--878075	32	2.6	30	76	13	79	55	2	2	39	1.27
878020--878072	15	3.2	17	72	22	58	60	3	0	35	1.15
878019--878073	17	3.4	16	74	20	60	58	3	0	38	1.16
879582--879629	15	3.4	14	81	16	55	52	0	4	43	1.20
879607--879697	36	2.5	33	73	18	83	54	1	1	42	1.14
880393--880417	13	1.9	13	100	0	50	68	0	0	32	0.90
880938--880987	17	2.7	19	78	15	59	54	0	0	46	1.00
883566--883595	2	15.0	2	100	0	60	50	0	0	50	1.00
883901--883946	23	2.0	23	83	4	58	39	2	6	52	1.40
884045--884089	19	2.4	19	85	11	65	48	0	0	51	1.00
884046--884089	18	2.3	19	88	7	63	50	0	0	50	1.00
889529--889653	13	9.8	13	65	23	52	51	0	0	48	1.06
889674--889719	15	3.0	15	80	3	56	65	0	0	34	0.93
889677--889724	15	3.1	15	80	16	53	66	0	0	33	0.92
890216--890270	28	1.9	28	88	3	83	40	0	0	60	0.97
896061--896091	15	2.1	15	100	0	62	0	19	41	38	1.51
896901--896967	12	5.5	12	70	21	50	56	0	1	41	1.08
896905--896954	17	2.8	18	80	14	59	56	0	2	42	1.11
897410--897448	2	19.5	2	100	0	78	51	0	0	48	1.00
897969--898024	17	3.1	17	78	12	58	26	1	1	69	1.08
897968--898001	9	3.9	9	84	7	52	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
898421--898470	26	1.9	26	84	8	66	52	2	4	42	1.31
902111--902149	9	4.2	9	90	3	51	25	2	0	71	0.98
902116--902147	3	10.7	3	93	0	55	28	0	0	71	0.86
907637--907712	31	2.4	29	82	10	80	47	0	1	51	1.09
907665--907712	25	2.0	24	88	12	71	50	0	0	50	1.00
907652--907761	29	3.8	29	78	12	93	55	0	0	43	1.06
910248--910282	17	2.1	17	94	0	61	40	11	25	22	1.88
911248--911274	6	4.5	6	100	0	54	14	0	0	85	0.61
911508--911553	2	23.0	2	100	0	92	50	0	0	50	1.00
911653--911716	21	3.0	22	77	13	71	54	0	0	45	0.99
913664--913716	16	3.1	16	82	15	54	60	0	0	39	0.97
913687--913737	8	5.9	8	82	15	57	56	0	0	43	0.99
913663--913764	19	5.2	20	70	14	77	56	0	0	43	0.99
913693--913768	27	2.8	27	88	7	102	56	0	0	43	0.99
914045--914090	21	2.2	21	84	7	58	45	2	4	47	1.34
914051--914094	21	2.2	20	91	4	70	47	0	2	50	1.13
914057--914094	11	3.5	11	82	7	51	44	0	2	52	1.14
914211--914261	25	2.1	23	85	7	66	52	0	5	41	1.25
914816--914859	22	2.0	22	82	8	54	22	0	18	59	1.38
919494--919534	14	2.9	14	82	10	57	39	0	0	60	0.96
920700--920794	45	2.1	47	92	4	158	45	7	2	45	1.43
920957--920987	2	15.5	2	100	0	62	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
921223--921321	33	3.0	33	95	1	173	30	11	20	38	1.87
923502--923539	16	2.3	17	90	4	60	57	0	0	42	0.98
923825--923855	2	15.5	2	93	0	53	0	45	0	54	0.99
924161--924258	30	3.2	30	71	22	78	45	1	0	53	1.07
925834--925877	17	2.7	16	77	19	54	59	0	0	40	0.98
927381--927471	37	2.5	36	80	8	87	48	1	0	50	1.08
927515--927605	28	3.1	27	76	16	76	56	1	0	42	1.06
927485--927605	30	4.1	28	75	15	84	53	0	0	45	1.06
927534--927619	29	3.0	30	80	14	83	53	1	1	44	1.15
927976--928014	20	2.0	20	89	0	60	38	2	2	56	1.27
928040--928069	13	2.3	13	94	0	51	60	0	0	40	0.97
928039--928125	26	3.5	25	68	13	72	54	0	0	45	1.00
928049--928097	11	4.1	13	75	17	52	48	0	0	51	1.00
928050--928105	22	2.6	22	73	18	55	48	0	0	51	1.00
931455--931487	16	1.9	18	88	11	52	33	9	0	57	1.30
934677--934733	5	11.0	5	76	14	53	59	0	0	40	0.97
934669--934824	11	14.9	11	66	24	54	55	0	0	43	1.04
934725--934805	33	2.4	34	83	10	103	51	1	0	46	1.08
935453--935508	29	2.0	28	85	3	76	48	0	1	50	1.11
935747--935781	3	12.0	3	93	6	63	68	0	0	31	0.90
939143--939188	16	2.9	15	81	9	56	32	0	2	65	1.05
939132--939187	24	2.4	24	84	3	69	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
939204--939228	13	1.9	13	100	0	50	48	0	4	48	1.20
939292--939320	7	4.1	7	100	0	58	58	0	0	41	0.98
941534--941567	2	17.0	2	100	0	68	50	0	0	50	1.00
947407--947462	24	2.6	21	77	20	62	58	1	0	39	1.08
947416--947464	23	2.1	23	85	7	64	61	2	0	36	1.08
947450--947501	29	1.9	27	85	14	72	50	3	0	46	1.20
949802--949831	12	2.4	13	94	5	53	20	36	10	33	1.86
963892--963924	2	16.5	2	100	0	66	48	0	51	0	1.00
964334--964388	17	3.0	18	84	7	58	45	0	0	54	0.99
964767--964806	18	2.3	18	86	4	55	62	0	0	37	0.95
978555--978592	18	2.1	18	90	0	58	42	10	15	31	1.81
978943--978982	2	20.0	2	89	0	62	0	55	0	45	0.99
979249--979294	23	2.0	22	84	12	58	60	2	0	36	1.09
980114--980149	2	18.0	2	100	0	72	50	0	50	0	1.00
980250--980280	2	16.0	2	93	6	55	48	0	0	51	1.00
980254--980287	17	2.0	17	88	0	50	52	0	0	47	1.00
980248--980287	21	1.9	21	89	0	62	52	0	0	47	1.00
981723--981762	16	2.5	17	80	19	50	57	0	0	42	0.98
981738--981782	22	2.1	21	83	4	54	46	2	0	51	1.13
986868--986898	2	15.5	2	100	0	62	51	0	0	48	1.00
987832--987862	2	15.5	2	93	0	53	54	0	45	0	0.99
987834--987866	10	3.3	10	95	0	57	57	0	42	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
991473--991506	11	3.0	11	86	4	50	61	11	0	26	1.30
992506--992539	11	3.4	10	92	8	52	0	2	5	91	0.51
996636--996676	21	2.0	21	85	0	55	51	7	0	41	1.30
996851--996879	12	2.3	13	94	5	51	31	51	0	17	1.45
1001919--1001970	16	3.2	16	81	10	61	46	1	0	51	1.12
1002479--1002953	257	1.9	253	85	1	662	32	13	6	47	1.69
1003518--1003553	2	18.0	2	100	0	72	50	0	0	50	1.00
1003900--1003938	15	2.7	15	84	4	53	33	0	0	66	0.92
1003890--1003937	19	2.4	20	80	16	55	29	0	2	68	1.01
1004348--1004399	25	2.0	26	85	10	72	38	0	0	61	0.96
1008443--1008473	15	2.1	15	100	0	62	61	6	6	25	1.45
1011358--1011391	2	17.0	2	100	0	68	50	0	0	50	1.00
1011504--1011581	37	2.1	37	90	0	120	41	2	8	47	1.49
1018418--1018457	16	2.4	17	83	8	55	32	0	2	65	1.06
1018424--1018466	17	2.3	20	88	11	65	34	0	0	65	0.93
1018433--1018491	28	2.1	29	84	9	77	32	0	3	64	1.10
1018537--1018603	25	2.5	26	83	9	82	59	0	0	40	0.97
1019067--1019105	3	13.0	3	100	0	78	33	0	0	66	0.92
1025831--1025876	24	2.0	23	83	8	58	36	2	2	58	1.22
1027959--1028018	28	2.2	28	82	14	72	61	3	6	28	1.37
1028786--1028838	26	2.0	26	82	7	63	49	11	0	39	1.39
1031543--1031581	15	2.6	15	83	0	51	58	2	2	35	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1035882--1035929	9	6.1	8	77	22	57	58	0	0	41	0.98
1035891--1035929	14	2.6	16	92	8	64	56	0	0	43	0.99
1035885--1035984	23	4.6	22	68	20	68	50	0	1	49	1.07
1038026--1038059	2	17.0	2	100	0	68	50	0	50	0	1.00
1042479--1042543	27	2.4	27	92	0	103	43	20	9	27	1.82
1042479--1042558	27	2.9	28	85	5	92	46	18	10	25	1.80
1048400--1048470	24	2.9	24	71	10	63	30	2	4	61	1.29
1050581--1050642	14	4.6	14	78	15	60	41	0	0	58	0.98
1050568--1050628	28	2.2	28	82	11	72	37	0	0	62	0.96
1052944--1052990	16	2.7	18	77	9	53	46	0	4	48	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15